Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq111 134 1e-26 seq33 91.5 1e-13 >seq111 Length=4886044 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| ||||| |||||||| | || || ||| || | Sbjct 1690305 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1690364 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | || | || |||| |||||||| ||||| ||| | || || Sbjct 1690365 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690424 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||||||||| || | ||||| ||| ||||||||| Sbjct 1690425 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 1690484 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || ||||||||| ||||| Sbjct 1690485 CATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGT 1690521 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| ||||| |||||||| | || || ||| || | Sbjct 1689621 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1689680 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | || | || |||| |||||||| ||||| ||| | || || Sbjct 1689681 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1689740 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||||||||| || | ||||| ||| ||| ||||| Sbjct 1689741 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGATTACAA 1689800 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || ||||||||| ||||| Sbjct 1689801 CATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGT 1689837 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| || || |||||||| | || || || || | Sbjct 1690077 AATGCAAATCTTTGTCAAAACCCTCACTGGTAAGACCATCACACTGGAAGTAGAACCCTC 1690136 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | |||| || |||| |||||||| ||||| ||| | || || Sbjct 1690137 AGACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690196 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||||||||| |||| ||||||||| ||||||||| Sbjct 1690197 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 1690256 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || ||||| ||| ||||| Sbjct 1690257 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGT 1690293 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| ||||| |||||||| | || || ||| || | Sbjct 1690988 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1691047 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | || | || |||| |||||||| ||||| ||| | || || Sbjct 1691048 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1691107 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||||||||| || | ||||| ||| ||||||||| Sbjct 1691108 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 1691167 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| | || || ||||||||| ||||| Sbjct 1691168 CATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGT 1691204 Score = 125 bits (138), Expect = 7e-24 Identities = 158/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| ||||| |||||||| | || || || || | Sbjct 1690533 AATGCAAATTTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTGGAACCCTC 1690592 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || ||| | | || | || |||| |||||||| ||||| ||| | || || Sbjct 1690593 AGACACATTGAAAATG-TCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690651 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||||||||| || | ||||| ||| ||||||||| Sbjct 1690652 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 1690711 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || ||||| | || || ||||||||| |||| Sbjct 1690712 CATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCG 1690747 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| ||||| |||||||| | || || || || | Sbjct 1690760 AATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAACCCTC 1690819 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | || | || |||| |||||||| ||||| ||| | || || Sbjct 1690820 AGACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690879 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 1690880 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 1690939 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || ||||| ||| ||||| Sbjct 1690940 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGT 1690976 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| ||||| |||||||| | || || ||| | | Sbjct 1689394 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACCATCACACTTGAGGTGGAGCCATCA 1689453 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | || |||| |||||||| ||||| || | || || Sbjct 1689454 GATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCTCCAGATCAG 1689513 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || || ||||||||||| || | ||||||||| |||||||||| Sbjct 1689514 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1689573 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| | || || ||||||||| ||||| Sbjct 1689574 ATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGT 1689609 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| ||||| |||||||| | || || ||| || | Sbjct 1689849 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1689908 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | || | || |||| |||||||| ||||| ||| | || || Sbjct 1689909 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1689968 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||||||||| || | ||||| ||| ||| ||||| Sbjct 1689969 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGATTACAA 1690028 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || ||||| | || || ||||||||| |||| Sbjct 1690029 CATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCG 1690064 >seq33 Length=2977081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||||||| | || |||||| |||| || | || || ||||||||||| || | ||| Sbjct 76501 GGAATTCCCCCTGATCAACAGAGGCTGATCTTTGCCGGTAAACAGCTGGAGGATGGTCGC 76442 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 |||||| |||||||||||||| ||||| | || || ||| |||| || || |||| Sbjct 76441 ACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTGGTCCTCCGCCTGAGG 76382 Query 38466 GGCGG 38470 || || Sbjct 76381 GGAGG 76377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170561726720