Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq46 118 1e-21 seq40 113 5e-20 seq76 87.8 2e-12 >seq46 Length=1907351 Score = 118 bits (130), Expect = 1e-21 Identities = 150/205 (73%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| ||||||||||| ||||||||||| || ||||||||||| | ||||| ||| Sbjct 1804773 ACCAGGTTTTCATTAACAATTCCATCACTGGCAGCAAAAAATGCAAGGACATGGGAAATG 1804832 Query 19405 AAATG---TTTTTCATC--TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAAT 19459 || || || | |||| ||||| || | ||| | | | | |||||| || | || Sbjct 1804833 AAGTGGCGTTCTCCATCCTTGAGG-----GTTTCCCAGTGAATCAGATCTTTGGAGAGAT 1804887 Query 19460 CTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCAC 19519 | || || ||| | ||||| ||||||||||| ||||| || ||||| | ||| || ||| Sbjct 1804888 CAACCTCCTCAGCAGTCCAGAAAGAAGCCTCAGCTTTCTTGTACATCTGCCAGATGTCAT 1804947 Query 19520 GATATTGTATAGGAAATATAACAAA 19544 | || || |||||||| | ||||| Sbjct 1804948 GGTACTGGATAGGAAAGACTACAAA 1804972 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| || ||||| || || ||||| | || | ||||||||||||||| || ||||||| Sbjct 1803326 TCATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCT 1803385 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 | || |||||| |||||||| ||||| ||||| | ||||| || || Sbjct 1803386 CCAAAGATATATGCTCCATAAAGTCAAAGGGATTCTCCACATTGTAGAT 1803434 >seq40 Length=2822076 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| ||||||||||| ||||||||||| || |||||||| || | ||||| ||| Sbjct 2223054 ACCAGGTTTTCATTAACAATTCCATCACTGGCAGCAAAAAAGGCAAGGACATGGGAAATG 2223113 Query 19405 AAATG---TTTTTCATC--TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAAT 19459 || || || | |||| ||||| || | ||| | | | | |||||| || | || Sbjct 2223114 AAGTGGCGTTCTCCATCCTTGAGG-----GTTTCCCAGTGAATCAGATCTTTGGAGAGAT 2223168 Query 19460 CTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCAC 19519 | || || ||| | ||||| ||||||||||| ||||| || ||||| | ||| || ||| Sbjct 2223169 CAACCTCCTCAGCAGTCCAGAAAGAAGCCTCAGCTTTCTTGTACATCTGCCAGATGTCAT 2223228 Query 19520 GATATTGTATAGGAAATATAACAAA 19544 | || || |||||||| | ||||| Sbjct 2223229 GGTACTGGATAGGAAAGACTACAAA 2223253 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 18646 TCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTA 18705 ||||| |||||| || |||||||| || ||||| | || | ||||||||||||||| Sbjct 2221594 TCATTCCCATTCATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTT 2221653 Query 18706 GTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 || |||||||| || |||||| |||||||| ||||| ||||| | ||||| || || Sbjct 2221654 GTCTTTCCCTCCAAAGATATATGCTCCATAAAGTCAAAGGGATTCTCCACATTGTAGAT 2221712 >seq76 Length=1543109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| ||||||||||| || | || ||||| || || || | || || || Sbjct 1517877 TGGAATTCCCCAGATAGTACCCTCCTTGAGTAGATATTGCTCGTGTAGGCCTCAATGGAC 1517936 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| |||||||| |||||||| ||||||| || | || || || Sbjct 1517937 TCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGGGCCAACAACAAACTG 1517996 Query 47448 TTTCTTACTCCAT 47460 |||||||| |||| Sbjct 1517997 TTTCTTACCCCAT 1518009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106284563120