Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq40 104 3e-17 seq46 95.1 1e-14 >seq40 Length=2822076 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 36863 ATTACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGT 36922 ||| | ||||||||| |||||||| || |||||||| || ||| |||| || |||||||| Sbjct 2221596 ATTCCCATTCATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGT 2221655 Query 36923 CTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| || | ||||||| |||||||| ||||| ||||| Sbjct 2221656 CTTTCCCTCCAAAGATATATGCTCCATAAAGTCAAAGGGATT 2221697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 || || || |||||||| | ||| |||||||| ||||| || ||||| ||||| ||||| Sbjct 2222814 ATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCATAGCAATCTGG 2222873 Query 37506 AAACCATAAAAACACCTAGCTTC 37528 || ||||| |||||||||||||| Sbjct 2222874 AACCCATAGAAACACCTAGCTTC 2222896 >seq46 Length=1907351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 36863 ATTACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGT 36922 ||| | | ||||||| ||||| || || |||||||| || ||| |||| || |||||||| Sbjct 1803318 ATTCCCACTCATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGT 1803377 Query 36923 CTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| || | ||||||| |||||||| ||||| ||||| Sbjct 1803378 CTTTCCCTCCAAAGATATATGCTCCATAAAGTCAAAGGGATT 1803419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 || || || |||||||| | ||| |||||||| ||||| || ||||| ||||| ||||| Sbjct 1804533 ATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCATAGCAATCTGG 1804592 Query 37506 AAACCATAAAAACACCTAGCTTC 37528 || ||||| |||||||||||||| Sbjct 1804593 AACCCATAGAAACACCTAGCTTC 1804615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592314149382320