Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq190 244 9e-60 >seq190 Length=2335779 Score = 244 bits (270), Expect = 9e-60 Identities = 302/413 (73%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 29683 GGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCC 29742 || ||||| | |||||||| | |||||||| ||| |||||||| | ||| ||| Sbjct 1049714 GGGTGAGGATTGTAACCCTGAATCTCAAAATCCTCATACTTGAAGTCGTCAATGTTTTCC 1049655 Query 29743 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTC 29802 || | || || ||| ||| |||| || |||||||| | |||||| |||||| | ||| Sbjct 1049654 ACTGTTCTTTTGATCACCAGCTTGGGGAATGGTCTGGGTTTCCTCTCCAGCTGAATTTTC 1049595 Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 || ||||| | ||| | || ||||||||||| ||||||| |||||||| || || || Sbjct 1049594 AGAGGTTCTATGTGGTTCACATAGACGTGAGCATCTCCCAAAGTGTGGACGAAATCGCCG 1049535 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 || | || || |||| ||| || |||||||| || | ||| || || |||||||| || Sbjct 1049534 GGCTTGAGTCCTGTGATGTGGGCTATCATGTAGGTCAAGAGGGAATAACTGGCGATATTG 1049475 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982 || || ||||| || || || ||||| || | |||||| |||||||| ||||| || || Sbjct 1049474 AACGGCACCCCCAGGCCGATATCCCCGGATCGCTGGTACAGCTGACAGGAGAGTTCGCCA 1049415 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 | | |||||| |||||| | | || ||||| ||||| ||||| | | ||| Sbjct 1049414 TTACACACGTAGAACTGAACAAAAGCATGACACGGGGGAAGCGCCATCTTATCTAGGTCA 1049355 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 |||||||||||| ||| ||||||||| | ||| || || || ||| |||| Sbjct 1049354 CAGGGGTTCCAGGCAGACATGATGATGCGTCGGTCGTCCGGATTATTCTTGAT 1049302 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||||||||| || ||||| | ||||||||| |||||||| || |||||||| Sbjct 1048102 CATGTCTTTGTACTCTGCCCCAAAATGGCGCCACTGGAAGCCGTACACTGGACCCAGGTC 1048043 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||| || |||| || | ||| || |||| || || | || ||||| || || Sbjct 1048042 TCCTTCCTCCCGCTGGGTCAGACCCAGGTTATCCAGGAATTCCCGCGACCCGTTTGCATC 1047983 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG-ACGAACC 30328 |||||| | || || |||||| |||| || ||| ||| | || ||| || |||| Sbjct 1047982 CCAGATGTGGACTCCTTTCTCGCTCAGCTTCTTCCCGTTGGTGCAACC-CTGCACAAACC 1047924 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 |||||| ||||||| | || || ||| || |||| ||| || || || Sbjct 1047923 ACAGCAACTCCTCCGCTACACCCCGCCAGAAAACCCGCTTAGTGGTCAG 1047875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615817150334