Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq111 96.9 3e-15 seq33 84.2 2e-11 >seq111 Length=4886044 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || ||| ||| || ||||| |||||||| || || | || Sbjct 1690067 AGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGG 1690008 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||| |||| || ||| ||||| | ||| | || || Sbjct 1690007 CCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCT 1689948 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| | ||| || |||| || Sbjct 1689947 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTG 1689888 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| ||||| || ||||| Sbjct 1689887 ATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || ||| ||| || ||||| ||||| || || || | || Sbjct 1690750 AGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGG 1690691 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||| |||| || ||| ||||| | ||| | || || Sbjct 1690690 CCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCT 1690631 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| || | ||||| | ||||| |||| || Sbjct 1690630 TTGTCCTGGATCTTGGCCTTGACA-TTTTCAATGTGTCTGAGGGTTCCACTTCCAGTGTG 1690572 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| |||||||| ||||| Sbjct 1690571 ATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || ||| || || ||||| |||||||| || || | || Sbjct 1689839 AGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGG 1689780 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||| |||| || ||| ||||| | ||| | || || Sbjct 1689779 CCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCT 1689720 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| | ||| || |||| || Sbjct 1689719 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTG 1689660 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| ||||| || ||||| Sbjct 1689659 ATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689622 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || ||| ||| || ||||| ||||| || || || | || Sbjct 1691206 AGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGG 1691147 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||| |||| || ||| ||||| | ||| | || || Sbjct 1691146 CCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCT 1691087 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| | ||| || |||| || Sbjct 1691086 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTG 1691027 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| ||||| || ||||| Sbjct 1691026 ATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690989 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || ||| || || ||||| ||||| || || || | || Sbjct 1689611 AGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGG 1689552 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||| |||| || ||| ||||| | || | || || Sbjct 1689551 CCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCT 1689492 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| | ||||||||| | || Sbjct 1689491 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTG 1689432 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| ||||| || ||||| Sbjct 1689431 ATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || ||| || || ||||| ||||| || || || | || Sbjct 1690523 AGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGG 1690464 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||| |||| || ||| ||||| | ||| | || || Sbjct 1690463 CCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCT 1690404 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| | ||| || |||| || Sbjct 1690403 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTG 1690344 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| ||||| || ||||| Sbjct 1690343 ATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 >seq33 Length=2977081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||| ||| || ||| ||| || || || ||||| ||||| Sbjct 76377 CCTCCCCTCAGGCGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 76436 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| ||| ||||||||||| ||||| | ||||||||| | |||| Sbjct 76437 AGGGTGCGACCATCCTCCAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCAGGGGGA 76496 Query 48660 A 48660 | Sbjct 76497 A 76497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935937921634