Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq71 123 5e-23 seq76 114 2e-20 seq46 95.1 2e-14 seq40 95.1 2e-14 >seq71 Length=3982359 Score = 123 bits (136), Expect = 5e-23 Identities = 109/131 (83%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 213512 CACCTCCTGAGAGTCTG-TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGG 213570 |||||||| | | ||| ||||||||| ||||||||| ||||||||||| ||| ||||| Sbjct 1381684 CACCTCCTCTGGG-CTGCTGTACTCCACGATCTCGGTACACAGGTTGCTACATTTGATGG 1381626 Query 213571 TGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGG 213629 | ||||||||||| ||||||||| ||||| | ||| ||||||||| |||||||| || Sbjct 1381625 TCCCCAGGTTCTGCTGGTTTGAC-TTGCGGTTACAGTGATCCTTGTACAGCATGTACGGA 1381567 Query 213630 GACCCGGTCTC 213640 | ||||||||| Sbjct 1381566 GTCCCGGTCTC 1381556 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || || || || |||||||| ||| | || ||||||| ||| || Sbjct 1383204 TACCTGGAATTCCCCAGACAGTACCCTCCTTGAGTAGATATTGCTGGTGTAGGCCTCAAT 1383145 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||| || |||||||||||||| |||||| ||||| ||||||||||| | || | Sbjct 1383144 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGAGCTAACAACAA 1383085 Query 213035 ACTGTTCCTCACTCCGTG 213052 |||||| || ||||| || Sbjct 1383084 ACTGTTTCTAACTCCATG 1383067 >seq76 Length=1543109 Score = 114 bits (126), Expect = 2e-20 Identities = 107/131 (82%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 213512 CACCTCCTGAGAGTCTG-TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGG 213570 |||||||| | | ||| ||||||||| |||||||| ||||||||||| ||| ||||| Sbjct 1519486 CACCTCCTCTGGG-CTGCTGTACTCCACAATCTCGGTACACAGGTTGCTACATTTGATGG 1519544 Query 213571 TGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGG 213629 | ||||||||||| ||||| ||| ||||| | ||| ||||||||| |||||||| || Sbjct 1519545 TCCCCAGGTTCTGCTGGTTGGAC-TTGCGGTTACAGTGATCCTTGTACAGCATGTACGGA 1519603 Query 213630 GACCCGGTCTC 213640 | ||||||||| Sbjct 1519604 GTCCCGGTCTC 1519614 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || || || || |||||||| ||| | || ||||||| ||| || Sbjct 1517873 TACCTGGAATTCCCCAGATAGTACCCTCCTTGAGTAGATATTGCTCGTGTAGGCCTCAAT 1517932 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||| || |||||||||||||| |||||| ||||| |||||||| |||| || | Sbjct 1517933 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGGGCCAACAACAA 1517992 Query 213035 ACTGTTCCTCACTCCGTG 213052 |||||| || || || || Sbjct 1517993 ACTGTTTCTTACCCCATG 1518010 >seq46 Length=1907351 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | |||||| || | || |||| || || ||||||| |||| || || Sbjct 1804150 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 1804209 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 | |||||| || || || || ||| |||||||||||||||||| || || || || Sbjct 1804210 AACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGCC 1804269 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 | |||||| || | ||| | || ||| |||||| | |||||||||||| Sbjct 1804270 ACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTGCC 1804329 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||||||| || ||||||||||| || || Sbjct 1804330 TTCTTCTTGACACAAGGCATCGTCTCAATTGC 1804361 >seq40 Length=2822076 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | |||||| || | || |||| || || ||||||| |||| || || Sbjct 2222428 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 2222487 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 | |||||| || || || || ||| |||||||||||||||||| || || || || Sbjct 2222488 AACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGCC 2222547 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 | |||||| || | ||| | || ||| |||||| | |||||||||||| Sbjct 2222548 ACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTGCC 2222607 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||||||| || ||||||||||| || || Sbjct 2222608 TTCTTCTTGACACAAGGCATCGTCTCAATTGC 2222639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528631390720