Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq46 122 2e-22 seq40 122 2e-22 seq71 87.8 3e-12 >seq46 Length=1907351 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 |||||| |||||| |||||||| ||||||||| |||| ||| | ||| | Sbjct 1804339 TCAAGAAGAAGGCAGACTGGGCCATCAAGTGGATCGGGGACCAGGAAGCTGACTATGGGG 1804280 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 || || |||| |||||||||||||||||||||||||| ||||| || ||||| |||| Sbjct 1804279 AGAGGGTGGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTCAGTGGGAGCTTTGCTGCCA 1804220 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||| | ||| || ||| | |||||| || || ||| || || || |||| Sbjct 1804219 TCTTCTGGTTGAAGAAGCGGGGAATCATGCCAGGACTTACCTTCAGTAATGAACTTATCA 1804160 Query 25997 GCAGGGACGAGG 26008 |||| || |||| Sbjct 1804159 GCAGAGATGAGG 1804148 >seq40 Length=2822076 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 |||||| |||||| |||||||| ||||||||| |||| ||| | ||| | Sbjct 2222617 TCAAGAAGAAGGCAGACTGGGCCATCAAGTGGATCGGGGACCAGGAAGCTGACTATGGGG 2222558 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 || || |||| |||||||||||||||||||||||||| ||||| || ||||| |||| Sbjct 2222557 AGAGGGTGGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTCAGTGGGAGCTTTGCTGCCA 2222498 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||| | ||| || ||| | |||||| || || ||| || || || |||| Sbjct 2222497 TCTTCTGGTTGAAGAAGCGGGGAATCATGCCAGGACTTACCTTCAGTAATGAACTTATCA 2222438 Query 25997 GCAGGGACGAGG 26008 |||| || |||| Sbjct 2222437 GCAGAGATGAGG 2222426 >seq71 Length=3982359 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||||| | |||| | || ||| | | || | || |||||||||||| || |||||||| Sbjct 1381293 CATCAAAGTCCACTCCTCGTTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAG 1381234 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT-CAGATCCA 222122 || | || | ||| | || || ||| |||||| || |||| ||| | ||| |||| Sbjct 1381233 AGCGTAGAACAAATCGCGGGCCCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAG-TCCA 1381175 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||| |||||||| || ||||| |||||||| || | ||| | || || |||| || Sbjct 1381174 GGAACTGGAAAATGTCTGCATGCCATGGCTCCAGGTAAATGGCAAAGGCACCAGGTCTCT 1381115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840643419520