Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq111 125 1e-23 >seq111 Length=4886044 Score = 125 bits (138), Expect = 1e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||||||||| || |||||||| ||||| || || ||||||||||| || || || Sbjct 1690223 TGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATC 1690164 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | |||| |||||| || || | || ||||| || || || || ||||| Sbjct 1690163 TTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTACCA 1690104 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||| Sbjct 1690103 GTGAGGGTTTTGACAAAGATTTGCATT 1690077 Score = 123 bits (136), Expect = 4e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || |||||||| | || | ||| || | |||||||||||||| || ||||| Sbjct 1689576 AATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCT 1689517 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| ||||| ||||||||||| || || || |||| || | |||| ||| || Sbjct 1689516 CTGCTGATCTGGAGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGT 1689457 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||| || || || || || || || || || || ||||| ||||| ||||| Sbjct 1689456 ATCTGATGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTG 1689397 Query 193358 CAT 193360 ||| Sbjct 1689396 CAT 1689394 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||| | || | ||| || ||| || |||||||| | || | ||| || Sbjct 1691197 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCC 1691138 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | |||||||||||||| || |||||||| ||||| || || ||||||||||| || || Sbjct 1691137 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1691078 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | |||| ||| || || || | ||| ||||| || || || || || Sbjct 1691077 ATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTG 1691018 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| ||||| ||||||||| Sbjct 1691017 CCGGTGAGGGTTTTAACAAAGATTTGCATT 1690988 Score = 120 bits (132), Expect = 5e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || |||||||| | || | ||| || | |||||||||||||| || ||||| Sbjct 1690488 AATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCT 1690429 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || ||||||||||| || || || |||| || | |||| ||| || Sbjct 1690428 CTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGT 1690369 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || | ||| ||||| || || || || || || || || ||||| ||||| ||||| Sbjct 1690368 GTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTG 1690309 Query 193358 CATT 193361 |||| Sbjct 1690308 CATT 1690305 Score = 120 bits (132), Expect = 5e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || |||||||| | || | ||| || | |||||||||||||| || ||||| Sbjct 1690943 AATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCT 1690884 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || ||||||||||| || || || |||| || | |||| |||||| Sbjct 1690883 CTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGT 1690824 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || | || ||||| || || || || || || || || ||||| ||||| ||||| Sbjct 1690823 GTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTG 1690764 Query 193358 CATT 193361 |||| Sbjct 1690763 CATT 1690760 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||| | || | ||| || ||| || || ||||| | || | ||| || Sbjct 1690058 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCC 1689999 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | |||||||||||||| || |||||||| ||||| || || ||||||||||| || || Sbjct 1689998 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1689939 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | |||| ||| || || || | ||| ||||| || || || || || Sbjct 1689938 ATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTG 1689879 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| ||||| ||||||||| Sbjct 1689878 CCGGTGAGGGTTTTAACAAAGATTTGCATT 1689849 Score = 116 bits (128), Expect = 7e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||||||||| || |||||||| ||||| || || ||||||||||| || || || Sbjct 1689767 TGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATC 1689708 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | |||| ||| || || || | ||| ||||| || || || || || || Sbjct 1689707 TTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCG 1689648 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||| Sbjct 1689647 GTGAGGGTTTTAACAAAGATTTGCATT 1689621 Score = 114 bits (126), Expect = 2e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||| | || | ||| || ||| || |||||||| | || | ||| || Sbjct 1690741 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCC 1690682 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | |||||||||||||| || |||||||| ||||| || || ||||||||||| || || Sbjct 1690681 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1690622 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | |||| ||| || || || | || ||||| || || || || || Sbjct 1690621 ATCTTGGCCTTGACATTTTCAAT-GTGTCTGAGGGTTCCACTTCCAGTGTGATGGTCTTG 1690563 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| ||||| ||||||||| Sbjct 1690562 CCGGTGAGGGTTTTGACAAAAATTTGCATT 1690533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899650374046560