Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq168 86.0 2e-11 >seq168 Length=6231318 Score = 86.0 bits (94), Expect = 2e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || |||||| ||||| ||||| || | || ||||||| ||||||||||| Sbjct 143189 ACCAGTTTCAGCTGTTTTGACAGCAGTATCGATCAACCCTTCACGACCTCCCATAGCATG 143130 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||| | | || || || || ||| | ||| |||| ||||| || | | Sbjct 143129 GAAGTAGAATTCAGAGGGGGTAAGACCGGCAAGGTAAGAGTTCTCCACGAATCCTCTAGA 143070 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATG 302785 ||| ||| | |||| ||| | ||||| |||| || |||| || | | || ||| Sbjct 143069 CTCAGGCCCGTAGTCGTCCTTAATGAAGTGGGGCAAAGTTCTGTGTCGGA-AACCAAATG 143011 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 | || |||||||| ||||||||||| || || Sbjct 143010 GAATTCGCTTTCCTTCAACGTTCTGTTGACC 142980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810848956646