Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq111 114 8e-21 >seq111 Length=4886044 Score = 114 bits (126), Expect = 8e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 ||||||||| | | | || |||| || | |||| ||||||||||||||| ||||| Sbjct 1691219 ATTTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 1691160 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 || || |||| |||| ||||| || |||||||| ||||||| || ||||| ||| | Sbjct 1691159 GGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGG 1691100 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTC 34926 || | || || ||||| | || || ||||| | | || | || || ||| Sbjct 1691099 GGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTC 1691040 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || |||||||| || |||||||| || |||||||| ||||| Sbjct 1691039 TACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690989 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| || | |||| |||||||||||||| ||||| || ||| |||| |||| ||| Sbjct 1689602 ACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 1689543 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || |||||||| ||||||| || ||||| ||| | || | || || ||||| | Sbjct 1689542 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCCTGG 1689483 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||||| | | || | || | ||| || |||| || |||||||| Sbjct 1689482 ATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGATGGTCTTG 1689423 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||| || |||||||| |||||| Sbjct 1689422 CCAGTGAGGGTTTTCACAAAGATTTGCATG 1689393 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| || | |||| ||||||||||||||| || || || || |||| |||| ||| Sbjct 1690058 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCC 1689999 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || |||||||| ||||||| || ||||| ||| | || | || || ||||| | Sbjct 1689998 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1689939 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||||| | | || | || || ||| || || | || |||||||| Sbjct 1689938 ATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTG 1689879 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| || |||||||| ||||| Sbjct 1689878 CCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| || | |||| |||||||||||||| ||||| || || |||| |||| ||| Sbjct 1690514 ACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCC 1690455 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || |||||||| ||||||| || ||||| ||| | || | || || ||||| | Sbjct 1690454 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1690395 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||||| | | || | || || ||| || || | || |||||||| Sbjct 1690394 ATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTG 1690335 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| || |||||||| ||||| Sbjct 1690334 CCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| || ||| |||| | || ||||| || |||||||| ||| Sbjct 1690268 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAG 1690209 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| ||| | || | || || ||||| | || || |||||| | Sbjct 1690208 ATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTT 1690149 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || || || || | || |||||||| || |||||||| || ||| Sbjct 1690148 TCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACA 1690089 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 1690088 AAGATTTGCAT 1690078 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| || ||| |||| |||| ||||| || |||||||| ||| Sbjct 1690951 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAG 1690892 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| ||| | || | || || ||||| | || || ||||| | Sbjct 1690891 ATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTT 1690832 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || || || || | || |||||||| || |||||||| || ||| Sbjct 1690831 TCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACA 1690772 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 1690771 AAGATTTGCAT 1690761 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| || | |||| |||||||||||||| || || || || |||| |||| ||| Sbjct 1689830 ACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCC 1689771 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || |||||||| ||||||| || ||||| ||| | || | || || ||||| | Sbjct 1689770 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1689711 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||||| | | || | || || ||| || || | || |||||||| Sbjct 1689710 ATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTG 1689651 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| || |||||||| ||||| Sbjct 1689650 CCGGTGAGGGTTTTAACAAAGATTTGCAT 1689622 Score = 98.7 bits (108), Expect = 6e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| || | |||| ||||||||||||||| ||||| || || |||| |||| ||| Sbjct 1690741 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCC 1690682 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || |||||||| ||||||| || ||||| ||| | || | || || ||||| | Sbjct 1690681 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1690622 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||||| | | || | || || || || || | || |||||||| Sbjct 1690621 ATCTTGGCCTTGACATTTTCAAT-GTGTCTGAGGGTTCCACTTCCAGTGTGATGGTCTTG 1690563 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| || ||||| || ||||| Sbjct 1690562 CCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691378961602