Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq111 96.9 3e-15 >seq111 Length=4886044 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||||||||| | || ||||| ||||| || | ||| ||| | Sbjct 1690533 AATGCAAATTTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTGGAACCCTC 1690592 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || || ||||| || |||||||| | ||| ||||| Sbjct 1690593 AGACACATT-GAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690651 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || ||||||||||| || | | ||| | | |||||||| Sbjct 1690652 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 1690711 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| |||||||| || | || |||||||| | | || || |||| Sbjct 1690712 CATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGCCTTCGTGGAGGAA 1690761 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||| ||||| | || ||||| ||||| || | ||| ||| | Sbjct 1690988 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1691047 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || || ||||| || |||||||| | ||| ||||| Sbjct 1691048 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1691107 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || ||||||||||| || | | ||| | | |||||||| Sbjct 1691108 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 1691167 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786 |||||| |||||||| || | || |||||||| | | || || |||||| Sbjct 1691168 CATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGGAAAT 1691219 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||||||||| | || || || ||||| || | ||| || | Sbjct 1690077 AATGCAAATCTTTGTCAAAACCCTCACTGGTAAGACCATCACACTGGAAGTAGAACCCTC 1690136 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || ||| ||||| || |||||||| | ||| ||||| Sbjct 1690137 AGACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690196 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || ||||||||||| |||| | || | | |||||||| Sbjct 1690197 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 1690256 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| ||||| || || | || | |||||| | | || || |||| Sbjct 1690257 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGGAA 1690306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875059650662