Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq76 89.7 5e-13 seq71 89.7 5e-13 >seq76 Length=1543109 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| || ||| ||||||||| || ||||||| ||||| ||||| |||||||| || Sbjct 1519489 CTCCTCTGGGCTGCTGTACTCCACAATCTCGGTACACAGGTTGCTACATTTGATGGTCCC 1519548 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || ||||| || ||| ||||| ||| || |||||||||||||||||||| Sbjct 1519549 CAGGTTCTGCTGGTTGGACTTGCGGTTACAGTGATCCTTGTACAGCATGTACGG 1519602 >seq71 Length=3982359 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| || ||| ||||||||| |||||||||| ||||| ||||| |||||||| || Sbjct 1381681 CTCCTCTGGGCTGCTGTACTCCACGATCTCGGTACACAGGTTGCTACATTTGATGGTCCC 1381622 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || ||||| || || ||||| ||| || |||||||||||||||||||| Sbjct 1381621 CAGGTTCTGCTGGTTTGACTTGCGGTTACAGTGATCCTTGTACAGCATGTACGG 1381568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418636691920