Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq111 127 1e-24 >seq111 Length=4886044 Score = 127 bits (140), Expect = 1e-24 Identities = 158/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || ||||||||||| || ||| ||| || || |||||||| |||||||||||||| | Sbjct 1690747 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 1690688 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| |||||||||||||| ||||| | |||||||||| | || | ||||||||| Sbjct 1690687 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1690628 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATC 33714 || || || | | |||| ||| ||||| | |||||| || | ||||| Sbjct 1690627 TCCTGGATCTT-GGCCTTGACATTTTCAATGTGTCTGAGGGTTCCACTTCCAGTGTGATG 1690569 Query 33715 GTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || | ||||| ||||| || ||||| Sbjct 1690568 GTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Score = 125 bits (138), Expect = 5e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || ||||||||||| || ||| ||| || || ||||||||||||||||||||||| | Sbjct 1690064 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCA 1690005 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| |||||||||||||| ||||| | |||||||||| | || | ||||||||| Sbjct 1690004 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1689945 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || || | | |||| || | |||||| | || || || | ||||| Sbjct 1689944 TCCTGGATCTT-GGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGAT 1689886 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || | ||||| |||||||| ||||| Sbjct 1689885 GGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| ||||||||||| || ||| || || || |||||||| |||||||| ||||| | Sbjct 1689609 ACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 1689550 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| |||||||||||||| ||||| | |||||||||| | || | |||||||| Sbjct 1689549 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTT 1689490 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | |||| || | ||| || || ||||| |||| |||| Sbjct 1689489 GTCCTGGATCTT-GGCCTTGACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGA 1689431 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | ||||| |||||||| ||||| Sbjct 1689430 TGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| ||||||||||| || ||| || || || ||||||||||||||||||||||| | Sbjct 1689837 ACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCC 1689778 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| |||||||||||||| ||||| | |||||||||| | || | |||||||| Sbjct 1689777 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1689718 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | |||| || | |||||| | || || || | |||| Sbjct 1689717 GTCCTGGATCTT-GGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGA 1689659 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | ||||| |||||||| ||||| Sbjct 1689658 TGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689622 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| ||||| ||||| || ||| || || || |||||||| |||||||| ||||| | Sbjct 1690293 ACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 1690234 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| |||||||||||||| ||||| | |||||||||| | || | |||||||| Sbjct 1690233 GTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1690174 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | || |||| || | ||||| | ||| || || | |||| Sbjct 1690173 GTCCTGGATCTT-GGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGA 1690115 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| || | ||||| |||||||| ||||| Sbjct 1690114 TGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCAT 1690078 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| ||||||||||| || ||| ||| || || |||||||| |||||||||||||| | Sbjct 1691204 ACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCC 1691145 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| |||||||||||||| ||||| | |||||||||| | || | |||||||| Sbjct 1691144 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1691085 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | |||| || | |||||| | || || || | |||| Sbjct 1691084 GTCCTGGATCTT-GGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGA 1691026 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | ||||| |||||||| ||||| Sbjct 1691025 TGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690989 Score = 118 bits (130), Expect = 7e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| ||||||||||| || ||| || || || |||||||| |||||||||||||| | Sbjct 1690521 ACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCC 1690462 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| |||||||||||||| ||||| | |||||||||| | || | |||||||| Sbjct 1690461 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1690402 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | |||| || | |||||| | || || || | |||| Sbjct 1690401 GTCCTGGATCTT-GGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGA 1690343 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | ||||| |||||||| ||||| Sbjct 1690342 TGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| ||||| ||||| || ||| || || || |||||||| |||||||| ||||| | Sbjct 1690976 ACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 1690917 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| |||||||||||||| ||||| | |||||||||| | || | |||||||| Sbjct 1690916 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1690857 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | |||| || | ||||| | ||| || || | |||| Sbjct 1690856 GTCCTGGATCTT-GGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGA 1690798 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | ||||| |||||||| ||||| Sbjct 1690797 TGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 1690761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702565823360