Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq111 111 4e-19 >seq111 Length=4886044 Score = 111 bits (122), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| || || || ||||| ||||||||||| || |||||| | Sbjct 1690542 TTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTGGAACCCTCAGACACATT 1690601 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||| || || ||||||||||| || || || ||| | Sbjct 1690602 -GAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAGCAGAGATT 1690660 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| |||||||| ||| |||||||||| | || | |||| |||||| | ||||| Sbjct 1690661 GATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAACATTCAGAA 1690720 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || | || ||| | ||||| Sbjct 1690721 GGAGTCCACCCTCCATTTGGTGTTGCGCCTTCG 1690753 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||||| || || ||||| | ||| Sbjct 1689865 AAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTCAGACACCATTGAAAAT 1689924 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||||||||| || || || ||| | ||||| Sbjct 1689925 GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAGCAGAGATTGATCTTT 1689984 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| |||||||||| | || | ||||||||||| | ||||| ||||| Sbjct 1689985 GCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGATTACAACATTCAGAAGGAGTCC 1690044 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || ||| | ||||| Sbjct 1690045 ACCCTCCATTTGGTGTTGCGCCTTCG 1690070 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||| || || || ||||| ||||||| ||| || ||| Sbjct 1690764 CAAATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAACCCTCAGAC 1690823 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || ||||||||||| || || || Sbjct 1690824 ACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAGCAG 1690883 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| |||||||| ||| |||||||||| | || | |||| |||||| | Sbjct 1690884 AGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATT 1690943 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || || || | || ||| | ||||| Sbjct 1690944 CAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCG 1690981 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||||| || || ||||| | ||| Sbjct 1689637 AAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTCAGACACCATTGAAAAT 1689696 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||||||||| || || || ||| | ||||| Sbjct 1689697 GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAGCAGAGATTGATCTTT 1689756 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| |||||||||| | || | ||||||||||| | ||||| || || Sbjct 1689757 GCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGATTACAACATTCAGAAGGAATCC 1689816 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || ||| | ||||| Sbjct 1689817 ACCCTCCATTTGGTGTTGCGTCTTCG 1689842 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||||| || || ||||| | ||| Sbjct 1691004 AAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTCAGACACCATTGAAAAT 1691063 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||||||||| || || || ||| | ||||| Sbjct 1691064 GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAGCAGAGATTGATCTTT 1691123 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| |||||||||| | || | |||| |||||| | ||||| ||||| Sbjct 1691124 GCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAACATTCAGAAGGAGTCC 1691183 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || ||| | ||||| Sbjct 1691184 ACCCTCCATTTGGTGTTGCGTCTTCG 1691209 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||| || || || ||||| ||||||| ||| || ||| Sbjct 1690081 CAAATCTTTGTCAAAACCCTCACTGGTAAGACCATCACACTGGAAGTAGAACCCTCAGAC 1690140 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| || || ||||||||||| || || || Sbjct 1690141 ACTATTGAAAATGTCAAAGCCAA-GATCCAGGACAAAGAAGGAATCCCCCCAGATCAGCA 1690199 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | ||||| |||||||| ||| ||||||| || | || | |||| |||||| | Sbjct 1690200 GAGATTGATCTTTGCCGGAAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAACAT 1690259 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || || || | || ||| | ||||| Sbjct 1690260 TCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCG 1690298 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||||| || || ||||| | ||| Sbjct 1690321 AAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTCAGACACCATTGAAAAT 1690380 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||||||||| || || || ||| | ||||| Sbjct 1690381 GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAGCAGAGATTGATCTTT 1690440 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| |||||||||| | || | |||| |||||| | ||||| || || Sbjct 1690441 GCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAACATTCAGAAGGAATCC 1690500 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || ||| | ||||| Sbjct 1690501 ACCCTCCATTTGGTGTTGCGTCTTCG 1690526 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || ||||| || || || | ||| Sbjct 1689409 AAAACCCTCACTGGCAAGACCATCACACTTGAGGTGGAGCCATCAGATACCATTGAAAAT 1689468 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||||||||| || || || ||| | ||||| Sbjct 1689469 GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCTCCAGATCAGCAGAGATTGATCTTT 1689528 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| |||||||||| | || | |||| |||||| | ||||| || || Sbjct 1689529 GCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAATCC 1689588 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || ||| | ||||| Sbjct 1689589 ACCCTCCATTTGGTGTTGCGTCTTCG 1689614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181815379135718