Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq111 107 2e-18 seq76 105 6e-18 seq71 93.3 4e-14 >seq111 Length=4886044 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || || ||||||||||||||| | ||| || | Sbjct 1689608 CGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCA 1689549 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| | | ||| ||||||||||| || |||||||| Sbjct 1689548 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTG 1689489 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | ||||| | |||||||| || | || | Sbjct 1689488 TCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGATG 1689429 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| || ||||| | || || |||||| || Sbjct 1689428 GTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCATGGCT 1689390 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || ||||| | | | || || || ||||||||||||||| | ||| || Sbjct 1690292 CGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCG 1690233 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| | | ||| |||||||| || || |||||||| Sbjct 1690232 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1690173 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | ||| | ||| || | || || ||||| | || | Sbjct 1690172 TCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATG 1690113 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| || ||||| | || || ||||| Sbjct 1690112 GTCTTACCAGTGAGGGTTTTGACAAAGATTTGCAT 1690078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | |||||| |||||||| | | | ||||| || ||||||||||||||| | || Sbjct 1690754 ACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGT 1690695 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| |||||||| |||| | |||| | | ||| |||||||| || || || Sbjct 1690694 GCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCC 1690635 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || | | || | | || || || || || | || |||||||| | Sbjct 1690634 TTCTTTGTC-CTGGATCTTGGCCTTGACATTTTCAATGTGTCTGAGGGTTCCACTTCCAG 1690576 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || ||||| | ||||| ||||| Sbjct 1690575 TGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| || ||||||||||||||| | || || | Sbjct 1691203 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 1691144 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| | | ||| |||||||| || || |||||||| Sbjct 1691143 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1691084 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | ||||| ||||| | || | Sbjct 1691083 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATG 1691024 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || ||||| | || || ||||| Sbjct 1691023 GTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690989 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | |||||| |||||||| | | | ||||| || ||||||||||| ||| | || Sbjct 1690071 ACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGT 1690012 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| |||||||| |||| | |||| | | ||| |||||||| || || || Sbjct 1690011 GCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCC 1689952 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || || || | | ||| | || || | ||||| ||||| | Sbjct 1689951 TTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAG 1689892 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || ||||| | || || ||||| Sbjct 1689891 TGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || || ||||||||||||||| | || || | Sbjct 1690520 CGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 1690461 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| | | ||| |||||||| || || |||||||| Sbjct 1690460 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1690401 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | ||||| ||||| | || | Sbjct 1690400 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATG 1690341 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || ||||| | || || ||||| Sbjct 1690340 GTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || ||||| | | | || || || ||||||||||||||| | ||| || | Sbjct 1690975 CGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCA 1690916 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| | | ||| |||||||| || || |||||||| Sbjct 1690915 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1690856 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | ||| || | || || ||||| | || | Sbjct 1690855 TCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATG 1690796 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || ||||| | || || ||||| Sbjct 1690795 GTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 1690761 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || || ||||||||||| ||| | || || | Sbjct 1689836 CGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCA 1689777 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| | | ||| |||||||| || || |||||||| Sbjct 1689776 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1689717 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || || | ||||| ||||| | || | Sbjct 1689716 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATG 1689657 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || ||||| | || || ||||| Sbjct 1689656 GTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689622 >seq76 Length=1543109 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 147154 CCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCG 147213 ||||| |||| ||||||||||| || ||||| | |||| | ||||| ||||| ||| | Sbjct 1518536 CCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAGTAAATGGTCTCGAAG 1518595 Query 147214 ATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAG 147273 || ||||||||||| | ||||| ||||||||| | || | | || || | |||| Sbjct 1518596 ATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGGAATCTCATCAGAATAAAG 1518655 Query 147274 GCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG 147314 || ||||||| ||||| | || | |||||||| ||||| Sbjct 1518656 GCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATG 1518696 >seq71 Length=3982359 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 147154 CCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCG 147213 ||||| |||| ||||||||||| || ||||| | || | ||||| ||||| || | Sbjct 1382584 CCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAGTAAATGGTCTCAAAG 1382525 Query 147214 ATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAG 147273 || ||||||||||| | ||||| ||||||||| | || | | || || | |||| Sbjct 1382524 ATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGGAATCTCATCAGAATAAAG 1382465 Query 147274 GCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG 147314 || ||||||| ||||| | || | |||||||| ||||| Sbjct 1382464 GCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATG 1382424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609067164880