Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq173 87.8 6e-14 seq144 87.8 6e-14 seq143 87.8 6e-14 seq10 87.8 6e-14 >seq173 Length=2721753 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 2196259 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 2196316 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 2210111 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 2210168 >seq144 Length=4367352 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 1950277 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 1950220 >seq143 Length=4187197 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 262538 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 262595 >seq10 Length=2850922 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 1793817 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 1793874 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 1795488 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 1795545 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 1796647 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 1796704 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 1800327 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 1800270 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| Sbjct 1801462 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCAATCCCGGG 1801405 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||| Sbjct 1798294 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCCGGTTCATTCCCGGG 1798237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849537938910