Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq111 84.2 2e-11 >seq111 Length=4886044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| ||||| | ||||| |||||||| || ||||| ||||||| Sbjct 1690077 AATGCAAATCTTTGTCAAAACCCTCACTGGTAAGACCATCACACTGGAAGTAGAACCCTC 1690136 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || ||| | || ||| || || ||||||||||| | ||| ||||| Sbjct 1690137 AGACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690196 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || || | || | ||| || ||||| | ||||| || | ||| ||||| Sbjct 1690197 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 1690256 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || || ||||| || || |||||||| ||| | | || |||||| Sbjct 1690257 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGGA 1690305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| ||||| | || ||||||||||| || ||||| ||||||| Sbjct 1690760 AATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAACCCTC 1690819 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || ||| | || || || || ||||||||||| | ||| ||||| Sbjct 1690820 AGACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690879 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || || | || | ||| || ||||| | |||||| || | ||| ||||| Sbjct 1690880 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 1690939 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || || ||||| || || |||||||| ||| | | || |||||| Sbjct 1690940 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGGA 1690988 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||||||||| | || ||||||||||| || ||||| ||| ||| Sbjct 1689621 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1689680 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | ||| | || || || || ||||||||||| | ||| ||||| Sbjct 1689681 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1689740 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTAC 106436 || || | || | ||| || ||||| | |||||| | | ||| | ||||||| Sbjct 1689741 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCT--CCGATTAC 1689798 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||||| || || ||||| || || ||||| || ||| | | || |||||| Sbjct 1689799 AACATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGGA 1689849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402327844585664