Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq111 107 2e-18 >seq111 Length=4886044 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | |||||||||||| | || ||||| ||||||||||| |||| Sbjct 1689622 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1689563 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||| || | || |||||||| || || ||||| ||||| | |||||| || | || Sbjct 1689562 AGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAG 1689503 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | || |||||| |||||| ||| | | || | | || || | |||| Sbjct 1689502 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCA 1689443 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | ||||| || || || || | ||||||||||| || ||||| Sbjct 1689442 CCTCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | |||||||||||| | || |||||| ||||||||||| |||| Sbjct 1690761 TTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 1690702 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || |||||||| || || ||||| ||||| | |||||| || | | Sbjct 1690701 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690642 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | || |||||| |||||| ||| | | || || ||||| | ||||| Sbjct 1690641 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACA-TTTTCAATGTGTCTGAGGGTTCCA 1690583 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || || | ||||| ||||| || ||||||| Sbjct 1690582 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCATTC 1690532 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | |||||||||||| | || |||||| |||||||||||||||| Sbjct 1690078 TTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGG 1690019 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || |||||||| || || ||||| ||||| | |||||| || | | Sbjct 1690018 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1689959 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | || |||||| |||||| ||| | | || | | ||||| | || | Sbjct 1689958 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1689899 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || || | ||||| ||||| || ||||||| Sbjct 1689898 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATTC 1689848 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | |||||| ||||| | || ||||| ||||||||||| |||| Sbjct 1690306 TTCCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690247 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||| || |||| |||||||| || || ||||| ||||| | |||||| || | | Sbjct 1690246 AGAGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690187 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | || |||||| |||||| || | | || | | ||||| | ||| | Sbjct 1690186 GGATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTA 1690127 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || ||||| || | ||||| ||||| || ||||||| Sbjct 1690126 CTTCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCATTC 1690076 Score = 105 bits (116), Expect = 6e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || |||||| ||||| | | |||||||||||| | || |||||| ||||||||||| Sbjct 1691222 TTAATTTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTA 1691163 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 |||| | || || | || |||||||| || || ||||| ||||| | |||||| || Sbjct 1691162 GTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATC 1691103 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | || | | || |||||| |||||| ||| | | || | | ||||| | Sbjct 1691102 TGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGG 1691043 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || |||| ||||| || || || || | ||||| ||||| || ||||||| Sbjct 1691042 CTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATTC 1690987 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | |||||||||||| | || ||||| |||||||||||||||| Sbjct 1689850 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGG 1689791 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || |||||||| || || ||||| ||||| | |||||| || | | Sbjct 1689790 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1689731 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | || |||||| |||||| ||| | | || | | ||||| | || | Sbjct 1689730 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1689671 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || || | ||||| ||||| || ||||||| Sbjct 1689670 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATTC 1689620 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | |||||| ||||| | || ||||| ||||||||||| |||| Sbjct 1690989 TTCCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690930 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||| || | || |||||||| || || ||||| ||||| | |||||| || | | Sbjct 1690929 AGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690870 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | || |||||| |||||| ||| | | || | | ||||| | ||| | Sbjct 1690869 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTA 1690810 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || || | ||||| ||||| || ||||||| Sbjct 1690809 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATTC 1690759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | |||||||||||| | || ||||| ||||||||||| |||| Sbjct 1690534 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690475 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || |||||||| || || ||||| ||||| | |||||| || | | Sbjct 1690474 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690415 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | || |||||| |||||| ||| | | || | | ||||| | || | Sbjct 1690414 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1690355 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || || | ||||| ||||| || ||||||| Sbjct 1690354 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATTC 1690304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791582698640