Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq111 149 6e-31 >seq111 Length=4886044 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || |||||||| | || || ||||||||||| ||||||||||||||| Sbjct 1690306 TTCCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690247 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || |||||||| || ||||| ||||| | ||||||||| || | Sbjct 1690246 AGAGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690187 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || |||||| || | ||||| || | ||| | Sbjct 1690186 GGATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTA 1690127 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| ||||| || | ||||| || || ||||||||| Sbjct 1690126 CTTCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCATT 1690077 Score = 145 bits (160), Expect = 8e-30 Identities = 171/230 (74%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || |||||||| | || || ||||| ||||| ||||||||||||||| Sbjct 1690761 TTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 1690702 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || ||||| ||||| | ||||||||| || | Sbjct 1690701 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690642 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || |||| | | ||||||||| || | ||||| Sbjct 1690641 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGA-CATTTTCAATGTGTCTGAGGGTTCCA 1690583 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || ||||| | ||||| || |||||||||||| Sbjct 1690582 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCATT 1690533 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || |||||||| | || || ||||||||||| ||||||||||||||| Sbjct 1690989 TTCCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690930 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || |||||||| || ||||| ||||| | ||||||||| || | Sbjct 1690929 AGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690870 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || ||||| || | ||||| || | ||| | Sbjct 1690869 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTA 1690810 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || ||||| | ||||| || || ||||||||| Sbjct 1690809 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATT 1690760 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || |||||||| | || || ||||||||||| ||||||||||||||| Sbjct 1690534 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690475 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || ||||| ||||| | ||||||||| || | Sbjct 1690474 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690415 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || ||||| || | ||||| || | || | Sbjct 1690414 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1690355 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || ||||| | |||||||| || ||||||||| Sbjct 1690354 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690305 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 |||||||| | || |||||||| | || || ||||| ||||| ||||||||||||||| Sbjct 1691218 TTTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG 1691159 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | || || |||||||| || ||||| ||||| | ||||||||| || Sbjct 1691158 GAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGG 1691099 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| || || || || ||||| || | ||||| || | || Sbjct 1691098 GGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCT 1691039 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| || ||||| | |||||||| || ||||||||| Sbjct 1691038 ACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690988 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || |||||||| | || || ||||||||||| ||||||||||| ||| Sbjct 1689850 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGG 1689791 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || ||||| ||||| | ||||||||| || | Sbjct 1689790 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1689731 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || ||||| || | ||||| || | || | Sbjct 1689730 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1689671 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || ||||| | |||||||| || ||||||||| Sbjct 1689670 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689621 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || |||||||| | || || ||||||||||| ||||||||||||||| Sbjct 1689622 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1689563 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || |||||||| || ||||| ||||| | ||||||||| || | Sbjct 1689562 AGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAG 1689503 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || ||||| || | || || || | |||| Sbjct 1689502 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCA 1689443 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || | ||||| || || |||||||| Sbjct 1689442 CCTCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || |||||||| | || || ||||| ||||| ||||||||||| ||| Sbjct 1690078 TTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGG 1690019 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || |||||||| || ||||| ||||| | ||||||||| || | Sbjct 1690018 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1689959 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || ||||| || | ||||| || | || | Sbjct 1689958 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1689899 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || ||||| | |||||||| || ||||||||| Sbjct 1689898 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396138342160