Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq76 113 6e-20 seq71 109 8e-19 >seq76 Length=1543109 Score = 113 bits (124), Expect = 6e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || || || || || || || | ||||| | ||||||||| |||||||| || |||| Sbjct 1518521 TAGGTCTCGTACGGCCCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAG 1518580 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||| || ||||| |||| || || ||| || ||||| || ||||| || || Sbjct 1518581 TAAATGGTCTCGAAGATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGG-AA 1518639 Query 69076 TGTAAA-AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 | | | |||||||| || || |||| ||||||||| |||||||||||||| | |||||| Sbjct 1518640 TCTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCT 1518699 Query 69135 CTTATTTGA 69143 | | || || Sbjct 1518700 CATGTTGGA 1518708 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||||||||||| || || | | ||| ||||| || || || | || | || Sbjct 1517877 TGGAATTCCCCAGATAGTACCCTCCTTGAGTAGATATTGCTCGTGTAGGCCTCAATGGAC 1517936 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| |||||||| ||||| |||||||| || |||| ||| ||||| Sbjct 1517937 TCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGGGCCAACAACAAACTG 1517996 Query 68839 TTTCTAAGACCATGT 68853 ||||| | |||||| Sbjct 1517997 TTTCTTACCCCATGT 1518011 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| ||||| || || ||||||||||| |||||||| || ||||| || ||| | Sbjct 1519514 ATCTCGGTACACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGTTGGACTTGCGG 1519573 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 |||||| |||||||| || || ||||||| || || || |||| || ||||| Sbjct 1519574 TTACAGTGATCCTTGTACAGCATGTACGGAGTCCCGGTCTCGGTCTGCGACTCGAT 1519629 >seq71 Length=3982359 Score = 109 bits (120), Expect = 8e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || || || || || || || | || || | ||||||||| ||||||||||| |||| Sbjct 1382599 TAGGTCTCGTACGGCCCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAG 1382540 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||| || || || |||| || || ||| || ||||| || ||||| || || Sbjct 1382539 TAAATGGTCTCAAAGATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGG-AA 1382481 Query 69076 TGTAAA-AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 | | | |||||||| || || |||| ||||||||| |||||||||||||| | |||||| Sbjct 1382480 TCTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCT 1382421 Query 69135 CTTATTTGA 69143 | | || || Sbjct 1382420 CGTGTTGGA 1382412 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||||||||| | || || | | ||| ||||| ||||| || | || | || Sbjct 1383200 TGGAATTCCCCAGACAGTACCCTCCTTGAGTAGATATTGCTGGTGTAGGCCTCAATGGAC 1383141 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| |||||||| ||||| |||||||| || || | ||| ||||| Sbjct 1383140 TCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGAGCTAACAACAAACTG 1383081 Query 68839 TTTCTAAGACCATGT 68853 ||||||| |||||| Sbjct 1383080 TTTCTAACTCCATGT 1383066 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| ||||| || || ||||||||||| |||||||| || ||||| || ||| | Sbjct 1381656 ATCTCGGTACACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGTTTGACTTGCGG 1381597 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 |||||| |||||||| || || ||||||| || || || |||| || ||||| Sbjct 1381596 TTACAGTGATCCTTGTACAGCATGTACGGAGTCCCGGTCTCGGTCTGCGACTCGAT 1381541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905726083120