Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq190 145 6e-30 seq40 86.0 5e-12 >seq190 Length=2335779 Score = 145 bits (160), Expect = 6e-30 Identities = 279/409 (68%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 |||||| || || ||| || |||||||| ||| || || |||||| | || || Sbjct 1049322 CCGACGCATCATCATGTCTGCCTGGAACCCCTGTGACCTAGATAAGATGGCGCTTCCCCC 1049381 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 |||||| || |||||| ||||| || ||||| ||||| || ||||| |||| || Sbjct 1049382 GTGTCATGCTTTTGTTCAGTTCTACGTGTGTAATGGCGAACTCTCCTGTCAGCTGTACCA 1049441 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 |||| || || || || || ||||| ||||| || || || |||||| | || | || Sbjct 1049442 GCGATCCGGGGATATCGGCCTGGGGGTGCCGTTCAATATCGCCAGTTATTCCCTCTTGAC 1049501 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGA 41242 || ||||| || ||| | || | || || || || || || ||||| || ||||| Sbjct 1049502 CTACATGATAGCCCACATCACAGGACTCAAGCCCGGCGATTTCGTCCACACTTTGGGAGA 1049561 Query 41243 TGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAG 41302 || || | || | || |||||||| || | | | || ||| | ||||| || Sbjct 1049562 TGCTCACGTCTATGTGAACCACATAGAACCTCTGAAAATTCAGCTGGAGAGGAAACCCAG 1049621 Query 41303 ACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGA-TTTTTGCATCG 41361 |||||| || | ||| | || ||| | | || ||||||||||| || || | || | Sbjct 1049622 ACCATTCCCCAAGCTGGTGATCAAAAGAACAGTGGAAAACATTGACGACTTCAAGTAT-G 1049680 Query 41362 ATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGA 41410 | ||||||| || | ||||||||| ||||||| || |||||| Sbjct 1049681 AGGATTTTGAGATTCAGGGTTACAATCCTCACCCTAAGATAGCCATGGA 1049729 >seq40 Length=2822076 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 ||| | ||| | || || ||||| |||||||| |||| || ||||| || || ||||| Sbjct 2221710 CTACAATGTGGAGAATCCCTTTGACTTTATGGAGCATATATCTTTGGAGGGAAAGACAAA 2221651 Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588 || ||||||||||| || |||||||| ||| |||||| || |||| Sbjct 2221650 TTTCTTTGAAAAACGTGTAGGAGAATACCAGAAAATGGGGGTTATGA 2221604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454265849790