Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq71 82.4 8e-11 >seq71 Length=3982359 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||||||||| ||| ||||| ||| ||||||| |||||| || || | Sbjct 1381316 AGCCCTGGGCACTCGTGAGGGTCCATCAAAGTCCACTCCTCGTTCTTCTCCACGCGCTTC 1381257 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 ||||||||||| || |||||||| || ||| | |||||| | | ||||| | Sbjct 1381256 ATGAAGAGGTCAGGAATCCACAGAGCGTAGAACAAATCGCGGGCCCTCTGTTCCTCCT-T 1381198 Query 79444 CCCTG-GTTC-AGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGAT 79501 ||||| |||| |||| || || || | | ||||| || ||||| |||||||| | Sbjct 1381197 CCCTGTGTTCTTCTTGCAG-TCCAGGAACTGGAAAATGTCTGCATGCCATGGCTCCAGGT 1381139 Query 79502 AGATGGCGAACGAACC 79517 | ||||| || | ||| Sbjct 1381138 AAATGGCAAAGGCACC 1381123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522345351520