Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq46 98.7 1e-15 seq40 98.7 1e-15 seq71 96.9 4e-15 seq70 95.1 1e-14 seq76 91.5 2e-13 >seq46 Length=1907351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || | ||| || ||||| | ||| ||||||||| Sbjct 1804150 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 1804209 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| ||||||||| ||| ||||||||||||||||| || ||| |||||||| Sbjct 1804210 AACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGCC 1804269 Query 74892 AC 74893 || Sbjct 1804270 AC 1804271 >seq40 Length=2822076 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || | ||| || ||||| | ||| ||||||||| Sbjct 2222428 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 2222487 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| ||||||||| ||| ||||||||||||||||| || ||| |||||||| Sbjct 2222488 AACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGCC 2222547 Query 74892 AC 74893 || Sbjct 2222548 AC 2222549 >seq71 Length=3982359 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/193 (74%), Gaps = 10/193 (5%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT- 53628 || ||||| ||||| ||||| ||||| || |||||| | |||| || || |||| Sbjct 1381129 TTTGCCATTTACCTGGAGCCATGGCATGCAGACATTTTCCAGTTCCTGGA-CTGCAAGAA 1381187 Query 53629 GAAT-CAGGGT--GACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTC 53684 ||| ||||| || ||| ||| | || ||| || |||| ||| ||||||||||||| Sbjct 1381188 GAACACAGGGAAGGAGGAACAGAGG-GC--CCGCGATTTGTTCTAC-GCTCTGTGGATTC 1381243 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | |||||||||||| | ||||||||| ||||||||||| ||||| ||| ||| Sbjct 1381244 CTGACCTCTTCATGAAGCGCGTGGAGAAGAACGAGGAGTGGACTTTGATGGACCCTCACG 1381303 Query 53745 AGTGCCCCGGCCT 53757 ||||||| || || Sbjct 1381304 AGTGCCCAGGGCT 1381316 >seq70 Length=2192831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || |||||||| || |||||| | || || || || || Sbjct 1899140 GTGAAAATGTAACGAGGACTGGCAGCATCTTTACCACCATGTAATCGTGTTCCAAACTGA 1899081 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || | |||||||||||| | || ||||||||||| || ||||||| | Sbjct 1899080 CCAATGGGCTGCAGAACGTTCAGGTTGTTCGACCCAACAAAGTTTTGTGCTAAGTTGATA 1899021 Query 117425 ATCGT 117429 || || Sbjct 1899020 ATGGT 1899016 >seq76 Length=1543109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/193 (74%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT- 53628 |||||||| ||| | ||||| ||||| || |||||| | |||| || || |||| Sbjct 1520034 TTCGCCATTTACTTGGAGCCATGGCATGCAGACATTTTCCAGTTCCTGGA-CTGCAAGAA 1519976 Query 53629 GAAT-CAGGGT--GACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTC 53684 ||| ||||| || ||| ||| | || ||| || |||| ||| ||||||||||||| Sbjct 1519975 GAACACAGGGAAGGAGGAACAGA-GAGC--CCGCGATTTGTTCTAC-GCTCTGTGGATTC 1519920 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | |||||||||||| | ||||||||| | ||||||||| ||||| ||| ||| Sbjct 1519919 CTGACCTCTTCATGAAGCGCGTGGAGAAGAATGAGGAGTGGACTTTGATGGACCCTCACG 1519860 Query 53745 AGTGCCCCGGCCT 53757 ||||||| || || Sbjct 1519859 AGTGCCCAGGGCT 1519847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213551208400