Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq190 235 4e-57 >seq190 Length=2335779 Score = 235 bits (260), Expect = 4e-57 Identities = 300/413 (73%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 29756 GGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29815 || ||||| | |||||||| | |||||||| ||| |||||||| | | | ||| Sbjct 1049714 GGGTGAGGATTGTAACCCTGAATCTCAAAATCCTCATACTTGAAGTCGTCAATGTTTTCC 1049655 Query 29816 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTC 29875 || | || || ||| ||| |||| || |||||||| | |||||| |||||| | ||| Sbjct 1049654 ACTGTTCTTTTGATCACCAGCTTGGGGAATGGTCTGGGTTTCCTCTCCAGCTGAATTTTC 1049595 Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 || ||||| | || | || ||||||||||| ||||||| ||||||| || || || Sbjct 1049594 AGAGGTTCTATGTGGTTCACATAGACGTGAGCATCTCCCAAAGTGTGGACGAAATCGCCG 1049535 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 || | || || |||| ||| || |||||||| || | ||| || || |||||||| || Sbjct 1049534 GGCTTGAGTCCTGTGATGTGGGCTATCATGTAGGTCAAGAGGGAATAACTGGCGATATTG 1049475 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 30055 || || ||||| || || || ||||| || | |||||| |||||||| ||||| || || Sbjct 1049474 AACGGCACCCCCAGGCCGATATCCCCGGATCGCTGGTACAGCTGACAGGAGAGTTCGCCA 1049415 Query 30056 TCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 | | |||||| |||||| | || || ||||| ||||| ||||| | | ||| Sbjct 1049414 TTACACACGTAGAACTGAACAAAAGCATGACACGGGGGAAGCGCCATCTTATCTAGGTCA 1049355 Query 30116 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 |||||||||||| ||| ||||||||| | ||| || || || ||| |||| Sbjct 1049354 CAGGGGTTCCAGGCAGACATGATGATGCGTCGGTCGTCCGGATTATTCTTGAT 1049302 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||||||||| || ||||| | ||||||||| |||||||| || |||||||| Sbjct 1048102 CATGTCTTTGTACTCTGCCCCAAAATGGCGCCACTGGAAGCCGTACACTGGACCCAGGTC 1048043 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| || |||| || | ||| || |||| || || | || ||||| || || Sbjct 1048042 TCCTTCCTCCCGCTGGGTCAGACCCAGGTTATCCAGGAATTCCCGCGACCCGTTTGCATC 1047983 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTG-ACGAACC 30401 |||||| | || || ||||| |||| || ||| ||| | || ||| || |||| Sbjct 1047982 CCAGATGTGGACTCCTTTCTCGCTCAGCTTCTTCCCGTTGGTGCAACC-CTGCACAAACC 1047924 Query 30402 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30450 |||||| ||||||| | || || ||| || |||| ||| || || || Sbjct 1047923 ACAGCAACTCCTCCGCTACACCCCGCCAGAAAACCCGCTTAGTGGTCAG 1047875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308627216936