Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq111 131 1e-25 >seq111 Length=4886044 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||||||||| ||| ||||| |||||||| ||||| || Sbjct 1689848 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAG 1689789 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| |||||||| || || | ||| || || || || Sbjct 1689788 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1689729 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| |||||| || | | ||| |||||| | ||| ||| Sbjct 1689728 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1689669 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| | ||||| ||||| || ||||| Sbjct 1689668 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689622 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||||||||||||||| ||| |||||| |||||||| ||||| || Sbjct 1690076 CCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAG 1690017 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| |||||||| || || | ||| || || || || Sbjct 1690016 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1689957 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| |||||| || | | ||| |||||| | ||| ||| Sbjct 1689956 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1689897 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| | ||||| ||||| || ||||| Sbjct 1689896 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 131 bits (144), Expect = 1e-25 Identities = 166/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||||||||||||||| ||| |||||| |||||||| || || || Sbjct 1690759 CCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1690700 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| |||||||| || || | ||| || || || || Sbjct 1690699 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690640 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| |||| || | || || | | ||||||| | |||||| Sbjct 1690639 ATTCCTTCTTTGTCCTGGATC-TTGGCCTTGACATTTTCAATGTGTCTGAGGGTTCCACT 1690581 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| | ||||| |||||||| ||||| Sbjct 1690580 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||||||||| ||| |||||| |||||||| || || || Sbjct 1691215 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1691156 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| |||||||| || || | ||| || || || || Sbjct 1691155 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1691096 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| |||||| || | | ||| |||||| | ||| ||| Sbjct 1691095 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1691036 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| | ||||| ||||| || ||||| Sbjct 1691035 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690989 Score = 125 bits (138), Expect = 4e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||||||||| ||| ||||| |||||||| || || || Sbjct 1690532 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690473 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| |||||||| || || | ||| || || || || Sbjct 1690472 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690413 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| |||||| || | | ||| |||||| | ||| ||| Sbjct 1690412 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1690353 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| | ||||| ||||| || ||||| Sbjct 1690352 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Score = 122 bits (134), Expect = 5e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| |||||||| ||| ||||| |||||||| || || || Sbjct 1690304 CCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690245 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| || ||||| |||||||| || || | ||| || || || || Sbjct 1690244 AGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690185 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| |||||| ||| | | ||| |||||| | || ||| Sbjct 1690184 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACT 1690125 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || ||||| || | ||||| ||||| || ||||| Sbjct 1690124 TCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCAT 1690078 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| |||||||| ||| ||||| |||||||| || || || Sbjct 1690987 CCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690928 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| |||||||| || || | ||| || || || || Sbjct 1690927 AGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690868 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| |||||| || | | ||| |||||| | || ||| Sbjct 1690867 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACT 1690808 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| | ||||| ||||| || ||||| Sbjct 1690807 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 1690761 Score = 109 bits (120), Expect = 3e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||||||||| ||| ||||| |||||||| || || || Sbjct 1689620 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1689561 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| |||||||| || || | ||| || || || || Sbjct 1689560 AGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 1689501 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || ||||| |||||| || | | ||| || ||| |||||| Sbjct 1689500 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACC 1689441 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || || || || || | ||||||||||| || |||||| Sbjct 1689440 TCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCATG 1689393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728226795414