Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq190 114 1e-20 >seq190 Length=2335779 Score = 114 bits (126), Expect = 1e-20 Identities = 221/326 (68%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || || || ||| || | ||| | |||| || |||||||| || || | |||| Sbjct 1049311 AATCCGGACGACCGACGCATCATCATGTCTGCCTGGAACCCCTGTGACCTAGATAAGATG 1049370 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 ||||| |||||||| || | | || |||||||| ||||| || || ||||| Sbjct 1049371 GCGCTTCCCCCGTGTCATGCTTTTGTTCAGTTCTACGTGTGTAATGGCGAACTCTCCTGT 1049430 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 ||||| || || ||||| || || || || | |||||||||||||| || || ||||| Sbjct 1049431 CAGCTGTACCAGCGATCCGGGGATATCGGCCTGGGGGTGCCGTTCAATATCGCCAGTTAT 1049490 Query 34700 GCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCAT 34759 | || | || |||||||| || || || || | || || || | || || Sbjct 1049491 TCCCTCTTGACCTACATGATAGCCCACATCACAGGACTCAAGCCCGGCGATTTCGTCCAC 1049550 Query 34760 ACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAA 34819 || ||||| ||||| || |||| |||||||||| || | || || |||||| | Sbjct 1049551 ACTTTGGGAGATGCTCACGTCTATGTGAACCACATAGAACCTCTGAAAATTCAGCTGGAG 1049610 Query 34820 CGAGAGCCCCGACCGTTCCCCCAGCT 34845 | | ||| |||| |||||| |||| Sbjct 1049611 AGGAAACCCAGACCATTCCCCAAGCT 1049636 Score = 114 bits (126), Expect = 1e-20 Identities = 221/326 (68%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| |||||| |||| ||| | | | |||||| || || | || ||||||||| Sbjct 1049636 AGCTTGGGGAATGGTCTGGGTTTCCTCTCCAGCTGAATTTTCAGAGGTTCTATGTGGTTC 1049577 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 | |||| || ||||| ||||| || || || | || || || | || || Sbjct 1049576 ACATAGACGTGAGCATCTCCCAAAGTGTGGACGAAATCGCCGGGCTTGAGTCCTGTGATG 1049517 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || | || | ||||| || || |||||||||||||| | || Sbjct 1049516 TGGGCTATCATGTAGGTCAAGAGGGAATAACTGGCGATATTGAACGGCACCCCCAGGCCG 1049457 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || || ||||| || || ||||| ||||| || || ||||| |||||||| || Sbjct 1049456 ATATCCCCGGATCGCTGGTACAGCTGACAGGAGAGTTCGCCATTACACACGTAGAACTGA 1049397 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCAC 6799 | | || |||||||| ||||||||| | || || |||||||| || || Sbjct 1049396 ACAAAAGCATGACACGGGGGAAGCGCCATCTTATCTAGGTCACAGGGGTTCCAGGCAGAC 1049337 Query 6800 ATCACGATCCTTCTGTCATCAGGGTT 6825 || | ||| | || ||| || || || Sbjct 1049336 ATGATGATGCGTCGGTCGTCCGGATT 1049311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260394025760