Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq111 96.9 2e-15 >seq111 Length=4886044 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| || ||||| || || ||| | || || ||| | | Sbjct 1690077 AATGCAAATCTTTGTCAAAACCCTCACTGGTAAGACCATCACACTGGAAGTAGAACCCTC 1690136 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || |||||| || || ||||||||||| | || || || Sbjct 1690137 AGACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690196 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| | || || |||||||||||||| |||| |||| |||| | | ||||| ||||| Sbjct 1690197 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 1690256 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| || || || ||| | ||||| || |||||| | ||||| || Sbjct 1690257 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGG 1690304 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| ||||||||||| || ||||| || || ||| |||| || || | || Sbjct 1689394 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACCATCACACTTGAGGTGGAGCCATCA 1689453 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| ||||| || || ||||||||||| | || || | Sbjct 1689454 GATACCATTGAAAAT--GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCTCCAGATC 1689511 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || |||||||||||||| |||| || | |||| | | ||||| |||| Sbjct 1689512 AGCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACA 1689571 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || ||| | |||||||| |||||| | ||||| || Sbjct 1689572 ACATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGG 1689620 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| || || || || || ||| | || || ||| | | Sbjct 1690533 AATGCAAATTTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTGGAACCCTC 1690592 Query 27849 CGACG-ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || ||||||||||| | || || | Sbjct 1690593 AGACACATTGAAAAT--GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATC 1690650 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || |||||||||||||| |||| || | |||| | ||||| |||| Sbjct 1690651 AGCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACA 1690710 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| ||| | |||||||| ||||| | ||||| || Sbjct 1690711 ACATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGCCTTCGTGGAGG 1690759 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| || || || || || ||| | || || ||| | | Sbjct 1690760 AATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAACCCTC 1690819 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || ||||| || || ||||||||||| | || || || Sbjct 1690820 AGACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690879 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| | || || |||||||||||||| |||| || | |||| | | ||||| ||||| Sbjct 1690880 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 1690939 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| || || || ||| | ||||| || |||||| | ||||| || Sbjct 1690940 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGG 1690987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860847327866