Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq111 129 1e-24 seq100 89.7 1e-12 >seq111 Length=4886044 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || || ||||| ||||| | || || | |||||||||||||| Sbjct 1690052 TGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCCAGCTGT 1689993 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | || || || || || | |||||| |||||||||||||| Sbjct 1689992 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTG 1689933 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| |||||||| ||| || || || || ||||| ||||| || ||| Sbjct 1689932 GCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTG 1689873 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| | |||||| Sbjct 1689872 AGGGTTTTAACAAAGATTTGCATT 1689849 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| ||||| | || || | |||||||||||||| Sbjct 1689824 TGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCCAGCTGT 1689765 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | || || || || || | |||||| |||||||||||||| Sbjct 1689764 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTG 1689705 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| |||||||| ||| || || || || ||||| ||||| || ||| Sbjct 1689704 GCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTG 1689645 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| | |||||| Sbjct 1689644 AGGGTTTTAACAAAGATTTGCATT 1689621 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| || || | ||||| | || ||||||||||| Sbjct 1690280 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGT 1690221 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | || || || || || | |||||| |||||||||||||| Sbjct 1690220 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTG 1690161 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || ||||| ||| ||| || || || ||||| ||||| || ||| Sbjct 1690160 GCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTACCAGTG 1690101 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| | |||||| Sbjct 1690100 AGGGTTTTGACAAAGATTTGCATT 1690077 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| || || | ||||| | |||||||||||||| Sbjct 1690963 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGT 1690904 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | || || || || || | |||||| |||||||||||||| Sbjct 1690903 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTG 1690844 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || ||||| ||| ||| || || || ||||| ||||| || ||| Sbjct 1690843 GCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTGCCGGTG 1690784 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| | |||||| Sbjct 1690783 AGGGTTTTGACAAAGATTTGCATT 1690760 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || || ||||| || || | || || | |||||||||||||| Sbjct 1691191 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGT 1691132 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | || || || || || | |||||| |||||||||||||| Sbjct 1691131 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTG 1691072 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| |||||||| ||| || || || || ||||| ||||| || ||| Sbjct 1691071 GCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTG 1691012 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| | |||||| Sbjct 1691011 AGGGTTTTAACAAAGATTTGCATT 1690988 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| || || | ||||| | |||||||||||||| Sbjct 1689596 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGT 1689537 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | || || || ||||| | |||||| |||||||||||||| Sbjct 1689536 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCCTGGATCTTG 1689477 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| ||||| || || || ||||| || ||||| ||||| || ||| Sbjct 1689476 GCCTTGACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTG 1689417 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 1689416 AGGGTTTTCACAAAGATTTGCAT 1689394 Score = 122 bits (134), Expect = 2e-22 Identities = 150/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || || ||||| || || | || || | |||||||||||||| Sbjct 1690735 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGT 1690676 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | || || || || || | |||||| |||||||||||||| Sbjct 1690675 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTG 1690616 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || ||||| ||| ||| || || || ||||| ||||| || ||| Sbjct 1690615 GCCTTGACATTTTCAAT-GTGTCTGAGGGTTCCACTTCCAGTGTGATGGTCTTGCCGGTG 1690557 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| | |||||| Sbjct 1690556 AGGGTTTTGACAAAAATTTGCATT 1690533 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || || ||||| || || | || || | |||||||||||||| Sbjct 1690508 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGT 1690449 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | || || || || || | |||||| |||||||||||||| Sbjct 1690448 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTG 1690389 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| |||||||| ||| || || || || ||||| ||||| || ||| Sbjct 1690388 GCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTG 1690329 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| | |||||| Sbjct 1690328 AGGGTTTTAACAAAGATTTGCATT 1690305 >seq100 Length=894170 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| |||||| || || ||||| |||||||||||| || ||||| Sbjct 618683 CCTTCCTTGTCCTGAATCTTTGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCA 618624 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || ||||| | ||||| ||||| | |||||| Sbjct 618623 AGGGTGATGGTTTTACCCGTCAAGGTCTTCACAAAGATCTGCAT 618580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146683114670