Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq111 138 8e-28 >seq111 Length=4886044 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||||||||| || || || ||||| || ||||| || || | Sbjct 1690077 AATGCAAATCTTTGTCAAAACCCTCACTGGTAAGACCATCACACTGGAAGTAGAACCCTC 1690136 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | ||| || || ||||||||||| | || |||||||| Sbjct 1690137 AGACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690196 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||||| ||||| | ||| ||||| Sbjct 1690197 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 1690256 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || ||||| | |||||||| || | | || |||||| Sbjct 1690257 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGGA 1690305 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||||||||| || || || ||||| || ||||| || || | Sbjct 1689849 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1689908 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || || ||||||||||| | || |||||||| Sbjct 1689909 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1689968 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||| | ||||| | ||||||||| Sbjct 1689969 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGATTACAA 1690028 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || |||||||| | ||||| || || | | || |||||| Sbjct 1690029 CATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGCCTTCGTGGAGGA 1690077 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||||||||| || || || ||||| || ||||| || || | Sbjct 1689621 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1689680 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || || ||||||||||| | || |||||||| Sbjct 1689681 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1689740 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||| | ||||| | ||||||||| Sbjct 1689741 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGATTACAA 1689800 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || ||||| | ||||| || || | | || |||||| Sbjct 1689801 CATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGGA 1689849 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||||||||| || || || ||||| || ||||| || || | Sbjct 1690760 AATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAACCCTC 1690819 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || || || ||||||||||| | || |||||||| Sbjct 1690820 AGACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690879 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||| | ||||| | ||| ||||| Sbjct 1690880 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 1690939 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || ||||| | |||||||| || | | || |||||| Sbjct 1690940 CATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGGA 1690988 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||||||||| || || || ||||| || ||||| || || | Sbjct 1690988 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1691047 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || || ||||||||||| | || |||||||| Sbjct 1691048 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1691107 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||| | ||||| | ||| ||||| Sbjct 1691108 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 1691167 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || |||||||| | ||||| || || | | || |||||| Sbjct 1691168 CATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGGA 1691216 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||||||||| || || || ||||| || ||||| || || | Sbjct 1690305 AATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTC 1690364 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || || ||||||||||| | || |||||||| Sbjct 1690365 AGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690424 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||| | ||||| | ||| ||||| Sbjct 1690425 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 1690484 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || ||||| | ||||| || || | | || |||||| Sbjct 1690485 CATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGGA 1690533 Score = 125 bits (138), Expect = 5e-24 Identities = 166/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||||||||| || || || ||||| || ||||| || || | Sbjct 1690533 AATGCAAATTTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTGGAACCCTC 1690592 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || | || | | ||||||||||| | || |||||||| Sbjct 1690593 AGACACATTGAAAATGTCAAGGCCAAGA-TCCAGGACAAAGAAGGAATCCCCCCAGATCA 1690651 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| |||||||| | ||||| | ||| ||||| Sbjct 1690652 GCAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAA 1690711 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || |||||||| | ||||| || || | | || |||||| Sbjct 1690712 CATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGCCTTCGTGGAGGA 1690760 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || || || ||||| || || || || | | Sbjct 1689394 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACCATCACACTTGAGGTGGAGCCATCA 1689453 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || || || ||||||||||| | || |||||||| Sbjct 1689454 GATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCTCCAGATCAG 1689513 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||| ||||| |||||||| | ||||| | ||| |||||| Sbjct 1689514 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1689573 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || ||||| | ||||| || || | | || |||||| Sbjct 1689574 ATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGGA 1689621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008125221864