Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq190 262 3e-65 >seq190 Length=2335779 Score = 262 bits (290), Expect = 3e-65 Identities = 306/413 (74%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587 |||||||| | ||| |||| | |||||||| ||| |||||||| | | | ||| Sbjct 1049714 GGGTGAGGATTGTAACCCTGAATCTCAAAATCCTCATACTTGAAGTCGTCAATGTTTTCC 1049655 Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647 || | || || ||| ||| |||| || |||||||| | |||||| |||||||| || Sbjct 1049654 ACTGTTCTTTTGATCACCAGCTTGGGGAATGGTCTGGGTTTCCTCTCCAGCTGAATTTTC 1049595 Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || ||||| | ||||| | ||||||||||||||||||| |||||||| || || || Sbjct 1049594 AGAGGTTCTATGTGGTTCACATAGACGTGAGCATCTCCCAAAGTGTGGACGAAATCGCCG 1049535 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || |||| ||| || |||||||| || | ||| || || |||||||| || Sbjct 1049534 GGCTTGAGTCCTGTGATGTGGGCTATCATGTAGGTCAAGAGGGAATAACTGGCGATATTG 1049475 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || |||||||| || || || ||||| || | |||||| ||||| || ||||| || || Sbjct 1049474 AACGGCACCCCCAGGCCGATATCCCCGGATCGCTGGTACAGCTGACAGGAGAGTTCGCCA 1049415 Query 29828 TCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 | | |||||| |||||| | ||||| ||||| ||||| ||||| | | | ||| Sbjct 1049414 TTACACACGTAGAACTGAACAAAAGCATGACACGGGGGAAGCGCCATCTTATCTAGGTCA 1049355 Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 ||||||||||||| ||| ||||||||| | ||| || || || ||| |||| Sbjct 1049354 CAGGGGTTCCAGGCAGACATGATGATGCGTCGGTCGTCCGGATTATTCTTGAT 1049302 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| | ||||||||| |||||||| || ||||||||||| || |||| || | Sbjct 1048080 AAATGGCGCCACTGGAAGCCGTACACTGGACCCAGGTCTCCTTCCTCCCGCTGGGTCAGA 1048021 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| || |||| || || | || ||||| || |||||||| | || || |||||| Sbjct 1048020 CCCAGGTTATCCAGGAATTCCCGCGACCCGTTTGCATCCCAGATGTGGACTCCTTTCTCG 1047961 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTG-ACGAACCACAGCAGCTCCTCCACGACGGC 30195 |||| || ||| ||| | || ||| || |||||||||| ||||||| | || | Sbjct 1047960 CTCAGCTTCTTCCCGTTGGTGCAACC-CTGCACAAACCACAGCAACTCCTCCGCTACACC 1047902 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAG 30222 | ||| || |||| ||| || || || Sbjct 1047901 CCGCCAGAAAACCCGCTTAGTGGTCAG 1047875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161427859188