Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq46 96.9 3e-15 seq40 96.9 3e-15 >seq46 Length=1907351 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 |||||| || || || ||||| ||||| || || |||||||| || || || ||||| || Sbjct 1804523 TGGGTCCTGGATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCAT 1804582 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTT 4918 ||||||||| || || || || || ||||||||||| | |||||||| || Sbjct 1804583 AGCAATCTGGAACCCATAGAAACACCTAGCTTCTGTGGCCTGAACTTCCTT 1804633 >seq40 Length=2822076 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 |||||| || || || ||||| ||||| || || |||||||| || || || ||||| || Sbjct 2222804 TGGGTCCTGGATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCAT 2222863 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTT 4918 ||||||||| || || || || || ||||||||||| | |||||||| || Sbjct 2222864 AGCAATCTGGAACCCATAGAAACACCTAGCTTCTGTGGCCTGAACTTCCTT 2222914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047736729214