Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq76 105 9e-18 seq71 96.9 5e-15 seq46 84.2 3e-11 seq40 84.2 3e-11 >seq76 Length=1543109 Score = 105 bits (116), Expect = 9e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 77388 TCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTA 77447 ||||| | ||||||||| || || || ||| |||| ||||| || ||||| |||| || Sbjct 1518545 TCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAGTAAATGGTCTCGAAGATCTGTTTG 1518604 Query 77448 TTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAA-AGAATAAAGGCATCTGC 77506 || ||| || ||||| || || || || ||| | | ||||||||||| || || Sbjct 1518605 TTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGG-AATCTCATCAGAATAAAGGCGTCGGC 1518663 Query 77507 TAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 | |||||||||||||||||| ||||| | ||||||| | ||||| Sbjct 1518664 CAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTCATGTTGGA 1518708 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| ||||||| |||||||||||||| || ||| | || || || || || || | Sbjct 1516881 TCCAGGCGTAGAAGTGCATGCTTGTCAGCTTTCCATAGTTGGGCTCTGCAATGTGGATGT 1516940 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | |||||||| || || ||||| ||||||| |||||| ||||| || || | ||||| Sbjct 1516941 TAAGAGACTGACTCTGGTCAATGAATGCTCCTCGATCAGCGGCCATCTTGATCACGGTCT 1517000 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTG 76994 | || | || ||||| | ||| ||| Sbjct 1517001 TCTGGGAGATCTCCCACACAGTCTTG 1517026 >seq71 Length=3982359 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 77388 TCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTA 77447 || || | ||||||||| || || ||||| |||| ||||| || || || |||| || Sbjct 1382575 TCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAGTAAATGGTCTCAAAGATCTGTTTG 1382516 Query 77448 TTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAA-AGAATAAAGGCATCTGC 77506 || ||| || ||||| || || || || ||| | | ||||||||||| || || Sbjct 1382515 TTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGG-AATCTCATCAGAATAAAGGCGTCGGC 1382457 Query 77507 TAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 77551 | |||||||||||||||||| ||||| | ||||||| | ||||| Sbjct 1382456 CAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTCGTGTTGGA 1382412 >seq46 Length=1907351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/223 (70%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| ||| || || || || ||||| | ||| || || || Sbjct 1804150 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 1804209 Query 48225 AGCCAAAATATTGCCGCGAAAGATCC-AGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | ||| || || || || |||| ||| | ||||| ||||| || || || ||||| || Sbjct 1804210 AACCAGAAGATGGCAGC-AAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGC 1804268 Query 48284 GGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACC-GTTGTGCCCAATCAG 48339 | ||||| || || ||||| | || |||||| | || ||||| || | Sbjct 1804269 CACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATG-GCCCAGTCTG 1804327 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 |||||||||| ||||||||||| || || || ||||| || || Sbjct 1804328 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAG 1804370 >seq40 Length=2822076 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/223 (70%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| ||| || || || || ||||| | ||| || || || Sbjct 2222428 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 2222487 Query 48225 AGCCAAAATATTGCCGCGAAAGATCC-AGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | ||| || || || || |||| ||| | ||||| ||||| || || || ||||| || Sbjct 2222488 AACCAGAAGATGGCAGC-AAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGC 2222546 Query 48284 GGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACC-GTTGTGCCCAATCAG 48339 | ||||| || || ||||| | || |||||| | || ||||| || | Sbjct 2222547 CACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATG-GCCCAGTCTG 2222605 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 |||||||||| ||||||||||| || || || ||||| || || Sbjct 2222606 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAG 2222648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665691357120