Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq76 118 2e-21 seq71 104 3e-17 seq46 104 3e-17 seq40 100 4e-16 >seq76 Length=1543109 Score = 118 bits (130), Expect = 2e-21 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 || || ||||| | |||||| ||||| | ||| ||||| ||||||||||| |||| Sbjct 1518521 TAGGTCTCGTACGGCCCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAG 1518580 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 ||||| || ||||| |||| || || ||| || ||||| || || || || || Sbjct 1518581 TAAATGGTCTCGAAGATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGG-AA 1518639 Query 76079 TGTAAA-AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | | | |||||||| || || || |||||||||||||||||||| ||||| | |||||| Sbjct 1518640 TCTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCT 1518699 Query 76138 CTTATTGGA 76146 | | ||||| Sbjct 1518700 CATGTTGGA 1518708 Score = 96.9 bits (106), Expect = 5e-15 Identities = 114/154 (74%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 76157 TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTA 76216 || || | ||||||| | |||||||| || ||||| || ||||||||||||| ||||| Sbjct 1518951 TCAGGTACAGGGTAAAAGTTAATATCGATGATTTTGTTCAGATTTCTGACAATCACTTTG 1519010 Query 76217 ACCACGTCCTTTAGTTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGA 76273 ||| ||| |||||| ||| ||| | ||| | | ||||| ||||||| ||| Sbjct 1519011 GTGACGCTCTTCAGTTTGTCAAAGTCATAGGTTTTGTCTGGTTTCACATACATATTCAGA 1519070 Query 76274 GCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307 ||||| || |||| |||||| || || |||| || Sbjct 1519071 GCTATGGAAGCTAAATTACACACAGCCACCTGAT 1519104 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| ||||||| ||||||||||| || || ||| | || || || || || || | Sbjct 1516881 TCCAGGCGTAGAAGTGCATGCTTGTCAGCTTTCCATAGTTGGGCTCTGCAATGTGGATGT 1516940 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | |||||||| || || ||||| ||||||| |||||| ||||| || || | ||||| Sbjct 1516941 TAAGAGACTGACTCTGGTCAATGAATGCTCCTCGATCAGCGGCCATCTTGATCACGGTCT 1517000 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTG 75589 | || | || ||||| | ||| ||| Sbjct 1517001 TCTGGGAGATCTCCCACACAGTCTTG 1517026 >seq71 Length=3982359 Score = 104 bits (114), Expect = 3e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 || || ||||| | |||||| || || | ||| ||||| |||||||| || |||| Sbjct 1382599 TAGGTCTCGTACGGCCCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAG 1382540 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 ||||| || || || |||| || || ||| || ||||| || || || || || Sbjct 1382539 TAAATGGTCTCAAAGATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGG-AA 1382481 Query 76079 TGTAAA-AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | | | |||||||| || || || |||||||||||||||||||| ||||| | |||||| Sbjct 1382480 TCTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCT 1382421 Query 76138 CTTATTGGA 76146 | | ||||| Sbjct 1382420 CGTGTTGGA 1382412 Score = 87.8 bits (96), Expect = 3e-12 Identities = 112/154 (73%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 76157 TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTA 76216 || || | |||||| | |||||||| || ||||| || ||||||||||||| ||||| Sbjct 1382184 TCAGGTACAGGGTAGAAGTTAATATCAATGATTTTGTTCAGATTTCTGACAATCACTTTG 1382125 Query 76217 ACCACGTCCTTTAGTTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGA 76273 || ||| |||||| ||| ||| | ||| | | ||||| ||||||| ||| Sbjct 1382124 GTGACACTCTTCAGTTTGTCAAAGTCATAGGTTTTGTCTGGTTTCACATACATATTCAGA 1382065 Query 76274 GCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307 ||||| || |||| |||||| || || |||| || Sbjct 1382064 GCTATGGAAGCTAAATTACACACAGCCACCTAAT 1382031 >seq46 Length=1907351 Score = 104 bits (114), Expect = 3e-17 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 47017 TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAAT-- 47074 || ||||| || ||||||||||| |||||||||||||| | ||||| ||| || | Sbjct 1804779 TTTTCATTAACAATTCCATCACTGGCAGCAAAAAATGCAAGGACATGGGAAATGAAGTGG 1804838 Query 47075 -ATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 47133 || | |||| | || | | ||||| | | | |||||| || | ||| || || Sbjct 1804839 CGTTCTCCATC---CTTGAGGGTTTCCCAGTGAATCAGATCTTTGGAGAGATCAACCTCC 1804895 Query 47134 TCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGG 47193 ||||| |||||||| || ||||| ||||| || ||||| | ||| || ||| | || ||| Sbjct 1804896 TCAGCAGTCCAGAAAGAAGCCTCAGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGG 1804955 Query 47194 ATCGGAAAAATAACAAA 47210 || ||||| | ||||| Sbjct 1804956 ATAGGAAAGACTACAAA 1804972 Score = 96.9 bits (106), Expect = 5e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| ||||| || |||||||| ||||||||||| || || ||||| || || || || Sbjct 1803327 CATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 1803386 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||| ||||||| |||||||| ||||| ||||| Sbjct 1803387 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 1803419 Score = 87.8 bits (96), Expect = 3e-12 Identities = 157/224 (70%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| ||| || || || || ||||| | ||| ||||| || Sbjct 1804150 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 1804209 Query 46714 AGCCAAAATATAGCCGCGAAAGATCC-AGAAAAGAATATGCCTTCTACAGCCGCGAATGC 46772 | ||| || || || || |||| ||| | ||||| ||||| || ||||| || || || Sbjct 1804210 AACCAGAAGATGGCAGC-AAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGC 1804268 Query 46773 GACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGA--GCCCAATCA 46827 || | ||||| || || || || | | |||||| |||| ||||| || Sbjct 1804269 CACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCAC--TTGATGGCCCAGTCT 1804326 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 ||||| ||||| ||||||||||| || || || ||||| || || Sbjct 1804327 GCCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAG 1804370 >seq40 Length=2822076 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| |||||||| |||||||| ||||||||||| || || ||||| || || || || Sbjct 2221605 CATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 2221664 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||| ||||||| |||||||| ||||| ||||| Sbjct 2221665 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 2221697 Score = 100 bits (110), Expect = 4e-16 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 47017 TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAAT-- 47074 || ||||| || ||||||||||| ||||||||||| || | ||||| ||| || | Sbjct 2223060 TTTTCATTAACAATTCCATCACTGGCAGCAAAAAAGGCAAGGACATGGGAAATGAAGTGG 2223119 Query 47075 -ATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 47133 || | |||| | || | | ||||| | | | |||||| || | ||| || || Sbjct 2223120 CGTTCTCCATC---CTTGAGGGTTTCCCAGTGAATCAGATCTTTGGAGAGATCAACCTCC 2223176 Query 47134 TCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGG 47193 ||||| |||||||| || ||||| ||||| || ||||| | ||| || ||| | || ||| Sbjct 2223177 TCAGCAGTCCAGAAAGAAGCCTCAGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGG 2223236 Query 47194 ATCGGAAAAATAACAAA 47210 || ||||| | ||||| Sbjct 2223237 ATAGGAAAGACTACAAA 2223253 Score = 87.8 bits (96), Expect = 3e-12 Identities = 157/224 (70%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| ||| || || || || ||||| | ||| ||||| || Sbjct 2222428 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 2222487 Query 46714 AGCCAAAATATAGCCGCGAAAGATCC-AGAAAAGAATATGCCTTCTACAGCCGCGAATGC 46772 | ||| || || || || |||| ||| | ||||| ||||| || ||||| || || || Sbjct 2222488 AACCAGAAGATGGCAGC-AAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGC 2222546 Query 46773 GACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGA--GCCCAATCA 46827 || | ||||| || || || || | | |||||| |||| ||||| || Sbjct 2222547 CACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCAC--TTGATGGCCCAGTCT 2222604 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 ||||| ||||| ||||||||||| || || || ||||| || || Sbjct 2222605 GCCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAG 2222648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931209618560