Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq111 118 2e-21 >seq111 Length=4886044 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || ||||| || || ||||||||||||| | || | |||||||| || Sbjct 1690053 ATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCCAGCTG 1689994 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| ||||| | |||||||| || | | ||||||||| || || || || || Sbjct 1689993 TTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTT 1689934 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | | ||||||| ||||||||| || || || || ||||| || Sbjct 1689933 GGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGT 1689874 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || |||| |||||| Sbjct 1689873 GAGGGTTTTAACAAAGATTTGCATT 1689849 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || || || || || ||||||||||||| | || | |||||||| || Sbjct 1689825 ATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCCAGCTG 1689766 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| ||||| | |||||||| || | | ||||||||| || || || || || Sbjct 1689765 TTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTT 1689706 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | | ||||||| ||||||||| || || || || ||||| || Sbjct 1689705 GGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGT 1689646 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || |||| |||||| Sbjct 1689645 GAGGGTTTTAACAAAGATTTGCATT 1689621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815507568218