Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq40 105 7e-18 seq46 98.7 1e-15 >seq40 Length=2822076 Score = 105 bits (116), Expect = 7e-18 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 23202 ATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACC 23261 ||||||||| |||||||| || ||||| || |||||| |||| || ||||||||||| || Sbjct 2221602 ATTCATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCC 2221661 Query 23262 CTCTAATGATATATTTTCCATAAAATCAAATGGATT 23297 ||| || ||||||| |||||||| ||||| ||||| Sbjct 2221662 CTCCAAAGATATATGCTCCATAAAGTCAAAGGGATT 2221697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || || || |||||||| | ||| |||||||| || || || ||||| ||||||||||| Sbjct 2222814 ATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCATAGCAATCTGG 2222873 Query 23839 AACCCATAAAAACATCTAGCTTC 23861 |||||||| ||||| |||||||| Sbjct 2222874 AACCCATAGAAACACCTAGCTTC 2222896 >seq46 Length=1907351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 23204 TCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCT 23263 ||||||| ||||| || || ||||| || |||||| |||| || ||||||||||| |||| Sbjct 1803326 TCATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCT 1803385 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATT 23297 | || ||||||| |||||||| ||||| ||||| Sbjct 1803386 CCAAAGATATATGCTCCATAAAGTCAAAGGGATT 1803419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || || || |||||||| | ||| |||||||| || || || ||||| ||||||||||| Sbjct 1804533 ATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCATAGCAATCTGG 1804592 Query 23839 AACCCATAAAAACATCTAGCTTC 23861 |||||||| ||||| |||||||| Sbjct 1804593 AACCCATAGAAACACCTAGCTTC 1804615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485666341200