Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq649786 226 4e-54 seq656496 91.5 2e-13 seq360635 89.7 6e-13 seq271499 82.4 9e-11 >seq649786 Length=1608 Score = 226 bits (250), Expect = 4e-54 Identities = 568/858 (66%), Gaps = 28/858 (3%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| ||||| ||||| || || || || |||||||||||||| | ||| || || | Sbjct 41 TTTTGATATTCGCCCACCCGCTTCTCAAAGAAATTAGTTTTTCCCTGCAAGGAAATCATG 100 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCC---AATTCAGAA 33407 ||||| || || || |||||| |||| |||| ||||| ||| || || Sbjct 101 TCCATAAAGTCGAAAGGATTGACGGCATTATAAACTTTTTG---TCCGGTTAACTCCACC 157 Query 33408 ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467 | ||| | ||||| || || ||||||||| |||| | |||||| || || Sbjct 158 AGCAAACGGTCTGCCACAAACTCTATATATTGACACATCGAAGCGGCATTCATCCCGATT 217 Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 | | || ||||| | | || | ||| || | |||||| ||| || | | | ||| Sbjct 218 AAACTCACGGGAAGCGAATCGGTCACAAACTCCTTTTCAATTACTACGGCGTCTTTGATA 277 Query 33528 ATA--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAA-ACATCAA--AC 33582 || |||| || | | || | | | || | | |||||| | || || || Sbjct 278 ATTTCAATCACCCGCTCTTTTGGCAACG--GCTGAATCACGTGTTTAGTATATAAATGAC 335 Query 33583 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTC 33642 | || |||||||| |||| || ||||| | || ||||| || ||||| | | | Sbjct 336 AGGCAAAATCGCAATGCAAGCCTTCGTCGCGCGAGATCAATTCATTCGAAAAGCTCAAGC 395 Query 33643 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGA 33702 | ||||| ||||| || || || |||||||| ||||| || || || || ||||| | Sbjct 396 CCGGCATCAGGCCGCGTTTCTTCAGCCAAAAGATGGAGCAAAACGAACCCGAGAAGAAAA 455 Query 33703 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCC 33762 | ||||| || || ||||| ||||| || | |||| | Sbjct 456 TCCCTTCCACGGCGGCAAAAGCAATCAGACGCTCTTGANNNNNNNNNNNNNNNNA----- 510 Query 33763 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 || ||||||||||| |||||||| || || ||||||||| ||||| | || | Sbjct 511 AC------GCCCAATCGGCTTTCTTTTTCACGCATTCCATCGTTTCAATGGCGTGAAGCA 564 Query 33823 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33882 || || ||| || | ||||| || || ||||| || | || ||| |||| | Sbjct 565 GACGGTCTTTCTCCTGCGCGTCTTTCACGTAGGTATCAATGAGCAGCGAATAGGTTTCGG 624 Query 33883 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 33942 | || || ||||||| ||| || || || ||||||||| || |||| || ||| |||| Sbjct 625 AGTGGATATTTTCAACGGCAATTTGGAAGCCGTAGAAAAATTTAGCTTCCGTATATTGCA 684 Query 33943 CTTCTG-TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 |||| | ||||||| |||| || | |||||| || || ||||| || ||||| |||||| Sbjct 685 CTTCCGACACAAAAT-GTTCCGCCAGATTTTCGTTTACAATTCCGTCGCTGGCGGCAAAA 743 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATT 34060 |||||||| || || | ||||||| | || || |||| | || | | |||||| || Sbjct 744 AACGCCAAAACGTGCGTGATAAAATGTCGCTCATCGTGGTTTAAGCCT-TGCCAATCGTT 802 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 | ||||| | || ||| | |||||| | |||||||| || || || | || || Sbjct 803 CAAATCTTGACTTAAATCAATTTCTTCAGCCGTCCAAAAGCTGGCTTCGGCTTGCTTGTA 862 Query 34121 CATATTCCAGATGTCATG 34138 | ||||| ||||| || Sbjct 863 AAATTTCCAAATGTCGTG 880 >seq656496 Length=912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 63501 CCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 63560 |||||||| |||| ||| ||||||||| | ||| ||||| | ||| ||||| Sbjct 421 CCGGAGATGTAGCTGCCAGAGGCACGAATGCAATGAATATTCAGACCAACTCCACCTGCA 480 Query 63561 ATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCG 63620 | || || || | ||| ||| |||| || ||||||||||| ||||| ||||| ||||| Sbjct 481 CTCTTTGAAATAAGTGCACATTGTTTCAAAGTGTCATAGATTCCTTCAATGCTGTCATCA 540 Query 63621 ATCATGTTAAGTAGAAAACAGCT 63643 |||||| | ||||||||||| Sbjct 541 ATCATGGACAACAGAAAACAGCT 563 >seq360635 Length=7270 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| ||| ||||||| ||||| || | | ||| || || |||||||| || || || | Sbjct 620 TACCTGGTATTCTCCTGACAACACCCGTCTAGTATAGATGTTACTGGTGTAAGGCTCAAA 561 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 ||| ||||||||||| ||||||||||||||||| ||||| || | ||||| | Sbjct 560 ACTTTCACAGTTTCCCAAAATCTGAGCAGTTGATGCAGTTGGCATCGGAGACACCAGCAG 501 Query 62507 ACTATTTCTAAGACCGTAT 62525 |||||| | | |||||| Sbjct 500 ACTATTGCGCACTCCGTAT 482 >seq271499 Length=3361 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| || |||||||||||| ||||| || || | || || || | || || ||||| Sbjct 2310 TATTCTACTATCTCAGTGCAGAGATTGCTGCAGGTAATGGTCCCCAGGTTCTGCTGATTG 2369 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 |||||| ||||| ||||| || || || || |||| |||||||| ||| |||||| Sbjct 2370 CTCTTTCGATTACAGGCATCTTTGTAGAGCATATATGGTGTACCAGTCTCAGTCTGAG 2427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616752608596560