Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq649786 159 3e-34 >seq649786 Length=1608 Score = 159 bits (176), Expect = 3e-34 Identities = 548/854 (64%), Gaps = 18/854 (2%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||||||||| | || || || || |||||||| || || | | || || Sbjct 40 CTTTTGATATTCGCCCACCCGCTTCTCAAAGAAATTAGTTTTTCCCTGCAAGGAAATCAT 99 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||||||| |||||||| |||| | ||||||| | |||||| | Sbjct 100 GTCCATAAAGTCGAAAGGATTGACGGCATTATAAACTTTTTGTCCGGTTAACTCCACCAG 159 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 || | ||||| || || |||||||| ||| |||| || |||||| || || | Sbjct 160 CAAACGGTCTGCCACAAACTCTATATATTGACACATCGAAGCGGCATTCATCCCGATTAA 219 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | ||| |||| | | | |||| |||||||||||| || || || || |||| || Sbjct 220 ACTCACGGGAAGCGAATCGGTCACAAACTCCTTTTCAATTACTACGGCGTCTTTGATAAT 279 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAA-ACATTAA--ACACGC 11634 | | || || | || || | | |||||| | || || ||| || Sbjct 280 TTCAATCACCCGCTCTTTTGGCAACGGCTGAATCACGTGTTTAGTATATAAATGACAGGC 339 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||| ||||| || |||||||| | || | |||||| ||||| | || || || Sbjct 340 AAAATCGCAATGCAAGCCTTCGTCGCGCGAGATCAATTCATTCGAAAAGCTCAAGCCCGG 399 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT-GAACCAGAAAAGAATATTC 11753 ||||| || ||||| || | |||||| || | |||||| ||||| || ||||| || | Sbjct 400 CATCAGGCCGCGTTTCTTCAGCCAAAAGATGG-AGCAAAACGAACCCGAGAAGAAAATCC 458 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATT 11813 | ||||| || ||||| || | | | ||| | | Sbjct 459 CTTCCACGGCGGCAAAAGCAATCAGACGCTCTTGANNNNNNNNNNNNNNNNAAC------ 512 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 |||||||| ||||||||||| ||||||||||| ||||| || |||| || | | Sbjct 513 -----GCCCAATCGGCTTTCTTTTTCACGCATTCCATCGTTTCAATGGCGTGAAGCAGAC 567 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | ||| || ||| | || || ||||| || | | ||| |||| || | Sbjct 568 GGTCTTTCTCCTGCGCGTCTTTCACGTAGGTATCAATGAGCAGCGAATAGGTTTCGGAGT 627 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT 11993 | |||||||| | || ||||| || || |||||| || || || | | | || || | Sbjct 628 GGATATTTTCAACGGCAATTTGGAAGCCGTAGAAAAATTTAGCTTCCGTATATTGCACTT 687 Query 11994 CC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || ||| ||||| |||||| | ||| || |||||||| || || || | |||||||| Sbjct 688 CCGACACAAAAT-GTTCCGCCAGATTTTCGTTTACAATTCCGTCGCTGGCGGCAAAAAAC 746 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAA 12112 || | | || | ||||| | | || || | |||| | |||||| | ||| Sbjct 747 GCCAAAACGTGCGTGATAAAATGTCGCTCATCGTGGTTTAAGCCTTGCCAATCGTTCAAA 806 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 |||| |||||| | ||||||| | |||||||| || || | | ||| || || | | Sbjct 807 TCTTGACTTAAATCAATTTCTTCAGCCGTCCAAAAGCTGGCTTCGGCTTGCTTGTAAAAT 866 Query 12173 TTCCAGATATCATG 12186 ||||| || || || Sbjct 867 TTCCAAATGTCGTG 880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458805680552880