Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq649786 109 5e-19 >seq649786 Length=1608 Score = 109 bits (120), Expect = 5e-19 Identities = 479/752 (64%), Gaps = 41/752 (5%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||||||||||| || | || ||||| || || |||||||| | || ||||| | Sbjct 41 TTTTGATATTCGCCCACCCGCTTCTCAAAGAAATTAGTTTTTCCCTGCAAGGAAATCATG 100 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 |||||||| ||||||||||| | | ||| ||||| | ||| || | | | Sbjct 101 TCCATAAAGTCGAAAGGATTGACGGCATTATAAACTTTTTGTCCGGTTAACTCCACCAGC 160 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 || | ||| || ||||||||||| || || ||| || | ||||| || ||||| Sbjct 161 AAACGGTCTGCCACAAACTCTATATATTGACACATCGAAGCGGCATTCATCCCGATTAAA 220 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 | || || | | || || | ||| | ||||| || | || || || | | || Sbjct 221 CTCACGGGAAGCGAATCGGTCACAAACTCCTTTTCAATTACTACGGCGTCTTTGATAATT 280 Query 13100 TCTCTTATTACGTTCTCTAATGG--AGGATTTGAT-AGATGCTTAA-ACATCAT--ACAT 13153 || || || |||| ||| | | | || | || ||| | || | ||| Sbjct 281 TCA---ATCACCCGCTCTTTTGGCAACGGCTGAATCACGTGTTTAGTATATAAATGACAG 337 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 |||||||| || ||||| ||||| || | || | || || ||||| | | ||| Sbjct 338 GCAAAATCGCAATGCAAGCCTTCGTCGCGCGAGATCAATTCATTCGAAAAGCTCAAGCCC 397 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA-CGAACCCGaaaaaaaTAT 13272 ||||| || || ||||| || | |||||| || | |||||| ||||||||| || || || Sbjct 398 GGCATCAGGCCGCGTTTCTTCAGCCAAAAGATGG-AGCAAAACGAACCCGAGAAGAAAAT 456 Query 13273 TCCTTCAACTGCTGCAAACGCTATCA-AC-CT-TTCACCATACGTACTATTTTTACTCTC 13329 ||||| || || ||||| || |||| || || || | || Sbjct 457 CCCTTCCACGGCGGCAAAAGCAATCAGACGCTCTTGANNNNNNNNNNNNNNNNAAC---- 512 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| | ||||| | ||| ||||| | ||| |||| || |||| Sbjct 513 -------------GCCCAATCGGCTTTCTTTTTCACGCATTCCATCGTTTCAATGGCGTG 559 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC----TAT 13445 || | | | ||| |||| |||| | | ||| ||||||| ||| || Sbjct 560 AAGCAGACGGTCTTTCTCCTGCGCGTCT----TTCACGTAGGTATCAATGAGCAGCGAAT 615 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 | |||| || || |||||||| | || |||||||| || || ||| || |||| || | Sbjct 616 AGGTTTCGGAGTGGATATTTTCAACGGCAATTTGGAAGCCGTAGAAAAATTTAGCTTCCG 675 Query 13506 -ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTA 13564 ||| || ||||| || ||| ||| || | |||||||| || || ||||| || Sbjct 676 TATA-TTGCACTTCCGACACAAAATGTTCCGCCAGATTTTCGTTTACAATTCCGTCGCTG 734 Query 13565 GCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 || |||||||| || | | |||| | ||||| Sbjct 735 GCGGCAAAAAACGCCAAAACGTGCGTGATAAA 766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422265571798854