Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq649786 113 1e-19 seq47075 84.2 5e-11 >seq649786 Length=1608 Score = 113 bits (124), Expect = 1e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 ||||||||||||| || ||||| || ||||| ||||| || ||| | | ||||||||| Sbjct 479 TTGCTTTTGCCGCCGTGGAAGGGATTTTCTTCTCGGGTTCGTTTTGCTCCATCTTTTGGC 420 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 |||||||| | ||||| ||||| || || | || || || |||||||| | |||| Sbjct 419 TGAAGAAACGCGGCCTGATGCCGGGCTTGAGCTTTTCGAATGAATTGATCTCGCGCGACG 360 Query 269259 AAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAA 269298 |||| || || ||||| || || ||| |||| |||||| Sbjct 359 AAGGCTTGCATTGCGATTTTGCCTGTCATTTATATACTAA 320 >seq47075 Length=4692 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || ||||||||||| ||||| ||||| |||||||| | || || || || |||||| Sbjct 2333 CCCTCTTTATCCTGGATCTTGGCTTTCACATTTTCGATTGTGTCCGAGGGCTCGACCTCT 2274 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| || || || ||||| |||||||| Sbjct 2273 AGGGTGATGGTCTTCCCAGTTAGGGTCTTGACAAAAATCTGCAT 2230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1126916573114116