Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq553292 143 6e-30 seq1654014 141 2e-29 seq654965 132 1e-26 seq674120 87.8 4e-13 >seq553292 Length=5928 Score = 143 bits (158), Expect = 6e-30 Identities = 237/336 (71%), Gaps = 17/336 (5%) Strand=Plus/Minus Query 5772 CGCGCTACATCACGGTCGGCACGCTGGACGGCCGCATGATCGTGATGGTTTGGACGCCAC 5831 |||||| ||||||| ||| | | || |||| ||| ||| ||||| ||| | ||| Sbjct 3626 CGCGCTTGGTCACGGTTGGCCTGTTCGATTGCCGGATGGTCGCCATGGTCTGGGCACCAT 3567 Query 5832 GCGGCGAGGCTCGCCGCATTATCAGCATGAGGAAAGCAAATGACCGTGAGCAAGCGC--G 5889 ||||||| ||||||||||| ||||||||||||||||| ||||| || || || | | Sbjct 3566 GCGGCGAAGCTCGCCGCATCATCAGCATGAGGAAAGCCAATGAACGCGA--AATCACAAA 3509 Query 5890 CTACGCACACCGATTGGGTTGATCCGGACGACGCGCCGGAGCTGACCGACGAATTTTTTG 5949 ||| | | ||| | | || ||||||| ||||| || || |||||| ||||| | Sbjct 3508 ATACACCCGCCGCCTCGCCTGCGCCGGACGGTGCGCCAGAACTCGGCGACGAGTTTTTCG 3449 Query 5950 AGCGGGCGGACGAGTACGTCGGCGAC-CGCTTGGTCCGCCGTGGGCCGGGGC-GGCCGCT 6007 |||| || ||||||||| | || ||| || ||||| ||| ||| |||||| Sbjct 3448 AGCGCGCCGACGAGTACCTGGGTGACAAGC--------CCGTGCACCGTGGCAGGCCGCG 3397 Query 6008 C--GGC-AGTCACAAAACCGCGACGACGATTCGGCTCGACGATGACGTGCTCGACGCCTT 6064 | ||| || | | | | ||| |||| |||| | || ||| |||| ||||| Sbjct 3396 CCTGGCAAGACCCCAGCAGTTGTTGACCATTCTCTTCGATGCCGATGTGATCGAGGCCTT 3337 Query 6065 CAAAGCGACCGGCCGAGGCTGGCAAACGCGGGTGAA 6100 |||||||||||| | |||||||||||||| |||| Sbjct 3336 CAAAGCGACCGGAAGTGGCTGGCAAACGCGCATGAA 3301 >seq1654014 Length=698 Score = 141 bits (156), Expect = 2e-29 Identities = 230/327 (70%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 5625 TTACAATAAAGCTCATGGAACTTGAATACGAT-CCGAACAAACGCGACAAGACACTGACC 5683 |||||||||| | ||| || | |||| ||| ||| | || | | || |||| || || Sbjct 49 TTACAATAAATCG-ATGCAAATCGAATTCGACGCCGCA-AAGCAAGCCAGGACATTGGCC 106 Query 5684 GAGCGGGGGCTGGATTTCGCGCGTGCAGTGGAGGTGTTCGCCGGGCACCACTTCACGTTG 5743 ||||||||||| ||||||||| ||| | | ||||||| || ||| ||| ||| || Sbjct 107 GAGCGGGGGCTTGATTTCGCGGATGCGGCGCAGGTGTTTGCGGGGGTGAACTACACCGTG 166 Query 5744 GAGGATACGCGGGAGGATTACGTTGAATCGCGCTACATCACGGTCGGCACGCTGGACGGC 5803 | ||| || || |||| ||| ||| | |||| ||||| ||| | ||| Sbjct 167 GCAGATGACCGCAAGCCCTACGGGGAAGAGCGTTTTTTCACCATCGGCCTGCTCGCTGGC 226 Query 5804 CGCATGATCGTGATGGTTTGGACGCCACGCGGCGAGGCTCGCCGCATTATCAGCATGAGG 5863 || | | ||| |||||||||| || ||||||| || ||||||||||| ||||||| Sbjct 227 CGTGAGGTGGTGCTGGTTTGGACCCCGCGCGGCGCGGTGCGCCGCATTATTTCCATGAGG 286 Query 5864 AAAGCAAATGACCGTGAGCAAGCGCGCTACGCACACCGATTGGGTTGATCCGGACGACGC 5923 | || ||||| ||||| || | ||| || | ||||| |||||||||||||| Sbjct 287 TATGCCAATGAACGTGAAATTGCCAGATACCGACCCGCCATGGGTCGATCCGGACGACGC 346 Query 5924 GCCGGAGCTGACCGACGAATTTTTTGA 5950 |||||| || ||||||| | ||||| Sbjct 347 CCCGGAGTTGGGCGACGAACTCTTTGA 373 >seq654965 Length=7587 Score = 132 bits (146), Expect = 1e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 7329 ATGTTCGACAGAAGGGCGTCGACATGCGCATCGGACTGGACGTCTCATCGTTGGCGTTCA 7388 |||| || ||||| || || |||||||||||||| | ||| | | || |||| |||| Sbjct 6365 ATGTCCGCCAGAAAGGGGTGGACATGCGCATCGGGATCGACATTGCGTCACTGGCCTTCA 6424 Query 7389 AGAAGCAGGTGGATCAGATCGTATTGATTGCCGGCGACGCGGATTTCGTGCCGGCCGCAA 7448 || ||||| || |||||||| | | |||||||| || || ||||| || || || | Sbjct 6425 AGCGACAGGTTGACCAGATCGTTCTCGTCGCCGGCGATGCCGACTTCGTTCCTGCGGCCA 6484 Query 7449 AACAGGCGCGGCGTGAAGGCATCGATTTCATTCTTGATCCGATGTGGC 7496 | | ||||||||| |||||||| |||||||| || ||||||||||||| Sbjct 6485 AGCTGGCGCGGCGCGAAGGCATTGATTTCATCCTGGATCCGATGTGGC 6532 >seq674120 Length=100 Score = 87.8 bits (96), Expect = 4e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 23625 GCGGTGCGCGTGTAGTTCTCGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCC 23684 |||||||| ||||||||||||||||| || ||| ||||| ||| ||||| | |||| Sbjct 98 GCGGTGCGGGTGTAGTTCTCGAACGCAAATGCCGGGTCGTCGCTGCAGGTGCGGTTGCCC 39 Query 23685 CAGAACCGGAAGCCGTTGCGG 23705 ||||| ||||||||||||||| Sbjct 38 CAGAAGCGGAAGCCGTTGCGG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111998096485722