Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq649786 187 3e-42 seq698540 89.7 6e-13 seq418291 87.8 2e-12 seq533080 82.4 8e-11 >seq649786 Length=1608 Score = 187 bits (206), Expect = 3e-42 Identities = 601/923 (65%), Gaps = 45/923 (5%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||||||| | || | || |||||||||||||||||||||| || || || ||| Sbjct 41 TTTTGATATTCGCCCACCCGCTTCTCAAAGAAATTAGTTTTTCCCTGCAAGGAAAT-CAT 99 Query 18730 -TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC---TAATTCTAA 18785 |||||||| || || ||||| ||||||| | ||||| ||| ||| || | Sbjct 100 GTCCATAAAGTCGAAAGGATTGACGGCATTATAAACTTTTTG---TCCGGTTAACTCCAC 156 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || | | || || ||||| | |||||| |||| | | |||||| || || Sbjct 157 CAGCAAACGGTCTGCCACAAACTCTATATATTGACACATCGAAGCGGCATTCATCCCGAT 216 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 ||| | || || || | ||| || | ||| || | ||| || ||| || ||| || Sbjct 217 TAAACTCACGGGAAGCGAATCGGTCACAAACTCCTTTTCAATTACTACGGCGTCTTTGAT 276 Query 18906 AATAGATACAACTCTATCTTCATTAGGA--GGGTATAGAAGATGTTTAA-ACATCAA--A 18960 ||| | || | |||| || | | || | | | |||||| | || || | Sbjct 277 AATTTCAATCACCCGCTCTT--TTGGCAACGGCTGAATCACGTGTTTAGTATATAAATGA 334 Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || |||||||| ||||| | || ||||| | ||||||||||| ||||| | || Sbjct 335 CAGGCAAAATCGCAATGCAAGCCTTCGTCGCGCGAGATCAATTCATTCGAAAAGCTCAAG 394 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || |||||||| || | ||| || | ||| || || || ||| || || || ||||| Sbjct 395 CCCGGCATCAGGCCGCGTTTCTTCAGCCAAAAGATGGAGCAAAACGAACCCGAGAAGAAA 454 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || || |||||||||| || | ||| | Sbjct 455 ATCCCTTCCACGGCGGCAAAAGCAATCAGACGCTCTTGA--------------NNNNNNN 500 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 | |||||||| || |||||||| || ||| ||| || || || | | | Sbjct 501 NNNNNNNNNAACGCCCAATCGGCTTTCTTTTTCACGCATTCCATCGTTTCAATGGCGTGA 560 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG----TA 19256 | ||| ||| | | ||||| || || | ||||||| | | | || Sbjct 561 AGCAGACGGTCTTTCTCCTGCGCGTCTTTCACGTAGG----TATCAATGAGCAGCGAATA 616 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||| || || |||||||| | || || || || ||||| ||| || | ||||| || Sbjct 617 GGTTTCGGAGTGGATATTTTCAACGGCAATTTGGAAGCCGTAGAAAAATTTAGCTTCCGT 676 Query 19317 -TATCTGTACTTC--ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 ||| || ||||| || ||||||| || || ||| |||||| || || ||||| || || Sbjct 677 ATAT-TGCACTTCCGAC-ACAAAATGTTCCG-CCAGATTTTCGTTTACAATTCCGTCGCT 733 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT 19433 || |||||||| || || || || | ||||||||| ||||| | |||| | | || Sbjct 734 GGCGGCAAAAAACGCCAAAACGTGCGTGATAAAATGTCGCTCATC-GTGGTTTAAGCCTT 792 Query 19434 -CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 |||||| || | ||||| | |||||| | ||||||| | |||||||| || || | Sbjct 793 GCCAATCGTTCAAATCTTGACTTAAATCAATTTCTTCAGCCGTCCAAAAGCTGGCTTCGG 852 Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552 ||| || || | ||||| || || | | || ||||| | ||||| | | || Sbjct 853 CTTGCTTGTAAAATTTCCAAATGTCGTGGTGGGCAATGGGAAAGAGGACAAAGCGGTCTT 912 Query 19553 TATTTTCTTTAAGAATAGGTTCC 19575 | ||||||| | ||| |||||| Sbjct 913 TGTTTTCTTGCAAAATCGGTTCC 935 >seq698540 Length=100 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19038 tttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGC 19097 |||||| |||||| | |||||| ||||| ||| || ||||| || |||||||||||||| Sbjct 93 TTTTTTCAACCAGTAAATAGAACAAAATGCTCCCGAGAAGAAAATTCCTTCTACTGCTGC 34 Query 19098 AAAAGCAACTAGTCTTTCT 19116 |||||||| ||||||||| Sbjct 33 AAAAGCAATAAGTCTTTCT 15 >seq418291 Length=2843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| | ||||||||||| || | | ||| | ||| | ||||||| ||| ||||| | Sbjct 1704 TCCAACAGTAGAAATGCATGCTGCTCAGTTTGGCATAGTTTGGTTCTGCAATGTGAATGT 1763 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || |||||||| ||||| || | ||| | |||||| ||||| | | |||| | Sbjct 1764 TGAGGGACTGACTCTGGTCAATGAACGGACCACGATCAGCAGCCATCTTGATAATAGTCT 1823 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATA 47197 | || | |||||||| || ||||| || Sbjct 1824 TCTGGGAGATCTCCCAGACGGTTTTGTA 1851 >seq533080 Length=1015 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 ||||||||||| || | || || | | || ||||| |||| ||||||||||| || | Sbjct 560 TCAAATTCATCACCCCAAACTTTGTGAAGGCCTGGACACTCATGAGGACACATCAGTGTC 619 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AA 48244 || || ||| | | |||| |||| |||| |||||| ||||| || || ||| || Sbjct 620 CAGTCACCATTGCTCTCGACTCGCTTCATGAATAAATCTGGAATCCATAGTGC-ATAGAA 678 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 || || | | || | ||||| ||||| |||| | | || |||||||| | Sbjct 679 TAGGTCTCGTGCTCGCTGCTCTTCCTTGCCTGTATTTTTCCGACAATCCAGAAAGTCAAA 738 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 || || |||||||||||||| | || || || | |||| |||| Sbjct 739 GATGTCGGCATGCCATGGTTCCAGGTAAATGGCAAAAGCACCAGGTC 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550448365868280