Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq649786 105 6e-18 >seq649786 Length=1608 Score = 105 bits (116), Expect = 6e-18 Identities = 156/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 || |||||||||||| | || | |||| ||||| || | || ||||| || Sbjct 258 ATTGAAAAGGAGTTTGTGACCGATTCGCTTCCCGTGAGTTTAATCGGGATGAATGCCGCT 199 Query 47118 TCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT---CGGACAA 47174 || ||||| ||||||| ||||||||||| || ||| || ||||| || | ||||||| Sbjct 198 TCGATGTGTCAATATATAGAGTTTGTGGCAGACCGTTTGCTGGTGGAGTTAACCGGACAA 139 Query 47175 CCGAAATATTTTAATGCTCGT-AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGG 47233 ||| || |||||| ||| ||||| || || |||||| ||| ||||| | |||| Sbjct 138 ---AAAGTTTATAATGC-CGTCAATCCTTTCGACTTTATGGACATGATTTCCTTGCAGGG 83 Query 47234 CAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 ||||| ||||| || ||||| || || || || ||| Sbjct 82 AAAAACTAATTTCTTTGAGAAGCGGGTGGGCGAATAT 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466724335563720