Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq649786 102 8e-17 seq644427 98.7 1e-15 seq1631541 91.5 1e-13 seq444383 82.4 8e-11 >seq649786 Length=1608 Score = 102 bits (112), Expect = 8e-17 Identities = 168/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 21420 CCTCTTG-TATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGT 21478 ||| ||| |||||||| ||||| | ||||||||||| |||||||| | | | ||| Sbjct 39 CCTTTTGATATTCGCCCACCCGCTTCTCAAAGAAATTAGTTTTTCCCTGCAAGGAAATCA 98 Query 21479 TTTTCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGC 21538 | | |||||| | ||||||||| ||| | | || ||| | || | || ||||| Sbjct 99 TGTCCATAAAGTCGAAAGGATTGACGGCATTATAAACTTTTTGTCCGGTTAACTCCACCA 158 Query 21539 ACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACA 21598 |||||| || ||||| || || || ||||||||||| || |||||| || | | Sbjct 159 GCAAACGGTCTGCCACAAACTCTATATATTGACACATCGAAGCGGCATTCATCCCGATTA 218 Query 21599 GATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCA 21658 | || || |||| ||||| | ||||||||| || || | || || || ||||| | Sbjct 219 AACTCACGGGAAGCGAATCGGTCACAAACTCCTTTTCAATTACTACGGCGTCTTTGATAA 278 Query 21659 T 21659 | Sbjct 279 T 279 >seq644427 Length=940 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 7474 GAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTTGTTG 7533 || ||||||| | | ||| |||||||| | | ||||| || | | ||| || || Sbjct 576 GACCGCGATTTCAACTACGATTATTTTGGCTTCAAAACATTGGAGCGCTCTTACCTGATG 517 Query 7534 AAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGC 7593 |||||| ||||| || ||||||||| ||||| |||||| |||||||||| | ||| Sbjct 516 AAAATCGACGGCAAACCCGCGGAACGTCCGCAACATATGCTGATGCGCGTGGCTATCGGC 457 Query 7594 ATTCACGGCGAAGACATTGACGCCGCC 7620 |||||||| ||||| | ||||||||| Sbjct 456 ATTCACGGAGAAGATGTGGACGCCGCC 430 >seq1631541 Length=403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 8248 CAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAAT 8307 |||| ||||| || | |||||| ||||| ||||||||||| ||| ||| |||||| Sbjct 325 CAAATAGAAACAGGAACGCCGTATATGCTTTACAAAGACGCCGCCAATCGCAAGAGCAAT 266 Query 8308 CAAAGCAACGT--GGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACA 8365 || ||||| | |||||| || | |||||||| ||| | |||||| || | || | Sbjct 265 CA--GCAACATTTGGGCACGATAAAGTCAAGCAATCTTTGCACGGAAATTATAGAATATA 208 Query 8366 GCGCGCCCGACGAAGTGGCCGTTTGCAA 8393 | |||||||||||||| |||||||| Sbjct 207 CTTCTCCCGACGAAGTGGCGGTTTGCAA 180 >seq444383 Length=995 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 21544 CGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCG 21603 || || ||||| || || | |||||||||||| || || ||||| || | || | | Sbjct 863 CGGTCAGCCACAAACTCCACATATTGACACATGAGATCACAGTTCATTCCGATCAAAGCA 922 Query 21604 ACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCA 21658 || || || || || || || ||||||||||||||| | || ||||||||||||| Sbjct 923 ACGGGAAGAGCGTCTGTAAAGAACTCCTTCTCGATATCTACTGCTTCCTTGATCA 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494914371368040