Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_028248.1 Length=136896 Score E Sequences producing significant alignments: (Bits) Value seq657315 111 1e-19 >seq657315 Length=21388 Score = 111 bits (122), Expect = 1e-19 Identities = 217/320 (68%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 30703 CGAATTATTTCTAACCTATCCCTCATTAAGCCCAGCCAAATGGAATGCTCCAGGCTATCA 30762 || || || || | || ||| | ||| || |||| ||| || ||||||||||| | ||| Sbjct 18888 CGGATAATCTCCAGCCGATCGCGCATCAACCCCAACCAGATCGAATGCTCCAGCCCATCG 18829 Query 30763 TCGTAATGCTCAAAAGCCCTCCCGGTATTGAATGGTGGGTCTATGTAAACACACTTCACT 30822 ||||||||| ||| || || || || ||| | || ||||| ||| |||| || ||||| Sbjct 18828 TCGTAATGCGTAAAGGCACTGCCAGTGTTGTAAGGCGGGTCAATGAAAACGCATTTCACC 18769 Query 30823 TTGCCTGCATACTCTTGCTCTAGCGCCTTCAATGCTAATAAGTTATCTCCAAAAATCAGT 30882 ||||| | | | || ||| | |||||| | || | | |||||| || || || || Sbjct 18768 TTGCCAGAAAATTCCGCCTCCAACGCCTTGAGCGCCAGCAGGTTATCGCCGAAGATAAGG 18709 Query 30883 TTATTATCAAAAATATCGTTTTCGGTCAC---TTTCTGGCTGTGGTAAGATTTGCTAGAA 30939 ||||||||| ||||| || | || | || | ||| ||||| || | Sbjct 18708 CGATTATCAAAGATATCAGCATCCGAAACCCGGTGCTTGGCGTGATAAGACTTCTCTGTG 18649 Query 30940 TCTTCTAACAAAATGTGTGGCTCTAACTTTTTGCGCTCGTTTTTACCTATCCAGGTAAGT 30999 ||||| | ||||||| | ||||| | | || | | ||| || |||||||| ||| Sbjct 18648 TCTTCCAGCAAAATGCGCGGCTCCAGCCGGGGCCGTTTTTCTTTGCCAATCCAGGTGAGT 18589 Query 31000 TCTAATTTGGTTTTGCTCAT 31019 || | ||| ||| ||||| Sbjct 18588 TCGAGTTTTTGTTTACTCAT 18569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29728 GGGGCAAGTTTGTAATAACGGAAGCCACCACCACCTTGCCAGTTTACAGACTTAGAAATA 29787 || |||||||||||||| ||||| || ||||| ||||||||||| | || | | Sbjct 19758 GGTGCAAGTTTGTAATAGCGGAAACCGCCACCGCCTTGCCAGTTGGACGCCTGCGTCACC 19699 Query 29788 CCACCTTGATCTTCGCCATCGATCACTTTTTCCAAGCGCGGAATAATATGGGTATGACAA 29847 || || | ||||| || ||||| || |||| || ||||| ||||| ||||| || ||| Sbjct 19698 CCGCCCTTGTCTTCACCGTCGATGACCTTTTTCAGACGCGGGATAATGTGGGTGTGGCAA 19639 Query 29848 TGATCACCTAGCTCGATTGAGATCCAGCGTCTTTTCATCTTATGAGCTACAGCAGCAGTA 29907 || || || | ||| | ||||||||| | ||| || || || || || | || Sbjct 19638 TGCTCGCCCAACTCAACCATGATCCAGCGGCGGCCCATTTTGTGGGCAACGGCGCCGGTG 19579 Query 29908 GTTCCCGAACCACCGAATGAATC 29930 || || || || |||| || || Sbjct 19578 GTGCCGGAGCCGGCGAAGGAGTC 19556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429084802421079