Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq649786 232 6e-56 >seq649786 Length=1608 Score = 232 bits (256), Expect = 6e-56 Identities = 562/844 (67%), Gaps = 33/844 (4%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| |||||| || ||||| || |||||||||||||| || | || ||||| | Sbjct 41 TTTTGATATTCGCCCACCCGCTTCTCAAAGAAATTAGTTTTTCCCTGCAAGGAAATCATG 100 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||||||| || || ||||| || || ||| ||||| | ||| | || ||| Sbjct 101 TCCATAAAGTCGAAAGGATTGACGGCATTATAAACTTTTTGTCCGGTTAACTCCACCAGC 160 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCAT-GAGTTCGCAGTTAATTCCAATTAA 4435 || ||||| || ||||| |||||||| || | ||| || ||| || || || ||||| Sbjct 161 AAACGGTCTGCCACAAACTCTATATATTGACACATCGAAGCGGCA-TTCATCCCGATTAA 219 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 ||||| || |||| | |||| |||||| | ||| || |||||| ||| |||| || Sbjct 220 ACTCACGGGAAGCGAATCGGTCACAAACTCCTTTTCAATTACTACGGCGTCTTTGATAAT 279 Query 4496 ATCTTTTATTTTATCTTTAG---ATGGTTTATTTAC----TAAGTATCCAAACAATAAAC 4548 || | | ||||| | | || | | | || | ||||| ||| | | Sbjct 280 TTCAATCACCCGCTCTTTTGGCAACGGCTGAATCACGTGTTTAGTATATAAATGA----C 335 Query 4549 ACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAAT 4607 | |||||||| |||||||| |||||||| | || | |||| ||| || ||||| | || Sbjct 336 AGGCAAAATCGCAATGCAAGCCTTCGTCGC-GCGAGATCAATTCATTCGAAAAGCTCAAG 394 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | || | || || |||||||| || | | ||| || || || ||||| Sbjct 395 CCCGGCATCAGGCCGCGTTTCTTCAGCCAAAAGATGGAGCAAAACGAACCCGAGAAGAAA 454 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 || ||||| ||||||||||| || |||| | ||| || | Sbjct 455 ATCCCTTCCACGGCGGCAAAAGC----AATCAG-------ACGCTCTTGANNNNNNNNNN 503 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 || ||||| | ||||| || || ||||| || || | || |||| | Sbjct 504 NNNNNN---AACGCCCAATCGGCTTTCTTTTTCACGCATTCCATCGTTTCAATGGCGTGA 560 Query 4788 AATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 | | ||| || | ||||| | || || || || || || ||| || Sbjct 561 AGCAGACGGTCTTTCTCCTGCGCGTCTTTCACGTAGGTATCAATGAGCAGCGAATAGGTT 620 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 || || || |||||||| | ||||| || || ||||| || || ||||||| || | Sbjct 621 TCGGAGTGGATATTTTCAACGGCAATTTGGAAGCCGTAGAAAAATTTAGCTTCCGTATAT 680 Query 4908 TGAACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || ||||| | ||||||| || | | | ||||||||||| || ||||| ||||| || Sbjct 681 TGCACTTCCGACACAAAATGTTCCGCCAGA-TTTTCGTTTACAATTCCGTCGCTGGCGGC 739 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC-AGGCTTAAGTTTTTTCCAGT 5025 ||||||||||||||| || | ||||| | | || || || ||||| || ||| | Sbjct 740 AAAAAACGCCAAAACGTGCGTGATAAAATGTCGCTCATCGTGGTTTAAG-CCTTGCCAAT 798 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 | |||||||| | ||||||||| ||||||| | |||||||| ||||| |||| | Sbjct 799 CGTTCAAATCTTGACTTAAATCAATTTCTTCAGCCGTCCAAAAGCTGGCTTCGGCTTGCT 858 Query 5086 TGTA 5089 |||| Sbjct 859 TGTA 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418412314587491