Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq649786 185 1e-41 seq533080 132 7e-26 seq82254 105 9e-18 seq418291 102 1e-16 seq360635 91.5 2e-13 seq1045372 87.8 2e-12 >seq649786 Length=1608 Score = 185 bits (204), Expect = 1e-41 Identities = 600/919 (65%), Gaps = 40/919 (4%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||||||||| ||||| || ||||| || ||||||||||| || | ||| || || | Sbjct 41 TTTTGATATTCGCCCACCCGCTTCTCAAAGAAATTAGTTTTTCCCTGCAAGGAAATCATG 100 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC---TAATTCTGAA 47966 |||||||| || || ||||| || |||||||||| ||||| ||| ||| || Sbjct 101 TCCATAAAGTCGAAAGGATTGACGGCATTATAAACTTTTT---GTCCGGTTAACTCCACC 157 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | || | ||||| || || ||||||||| |||| | |||||| || || Sbjct 158 AGCAAACGGTCTGCCACAAACTCTATATATTGACACATCGAAGCGGCATTCATCCCGATT 217 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 | | || || || | || || | |||||| | ||| || || || || || Sbjct 218 AAACTCACGGGAAGCGAATCGGTCACAAACTCCTTTTCAATTACTACGGCGTCTTTGATA 277 Query 48087 ATCGATGTTACCGTTTCCTCACTTGG---TGGATACAACAAATGTTTA-AACATTAA--A 48140 || | ||| ||| |||| || | | || |||||| | || || | Sbjct 278 ATTTCAATCACC---CGCTCTTTTGGCAACGGCTGAATCACGTGTTTAGTATATAAATGA 334 Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || |||||||| ||||| | ||||| || | || ||||| || ||||| | | Sbjct 335 CAGGCAAAATCGCAATGCAAGCCTTCGTCGCGCGAGATCAATTCATTCGAAAAGCTCAAG 394 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA-GATCCAGAAAAGAA 48259 || ||||| || || ||||| || |||||||| | || || ||| || || || ||||| Sbjct 395 CCCGGCATCAGGCCGCGTTTCTTCAGCCAAAAGA-TGGAGCAAAACGAACCCGAGAAGAA 453 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || ||||| ||||| ||||| || | || | |||| | | Sbjct 454 AATCCCTTCCACGGCGGCAAAAGCAATCAGACGCTCT--TGANNNNNNNNNNNNNNNNAA 511 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 | |||||||| || ||||| || || || ||| ||||| || || | || Sbjct 512 C---------GCCCAATCGGCTTTCTTTTTCACGCATTCCATCGTTTCAATGGCGTGAAG 562 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 ||| || ||| || | ||||| ||||| ||||| || | || ||| |||| Sbjct 563 CAGACGGTCTTTCTCCTGCGCGTCTTTCACGTAGGTATCAATGAGCAGCGAATAGGTTTC 622 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||| |||||||||| || || || || ||||| ||| || | ||||| || || Sbjct 623 GGAGTGGATATTTTCAACGGCAATTTGGAAGCCGTAGAAAAATTTAGCTTCCGTATATTG 682 Query 48500 TACCTCCG-TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558 || |||| ||||||| |||| |||| ||| || ||||| ||||| || || || |||| Sbjct 683 CACTTCCGACACAAAAT-GTTCCGCCAGATTTTCGTTTACAATTCCGTCGCTGGCGGCAA 741 Query 48559 AAAATGCTAATACATGTTTAATAAAATATTTTTCGTTG-GAAGTCAGTTTATTCCAGTCA 48617 |||| || || || || | ||||||| | || | | | | || | | ||| || Sbjct 742 AAAACGCCAAAACGTGCGTGATAAAATGTCGCTCATCGTGGTTTAAGCCT-TGCCAATCG 800 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 || | ||||| || ||| | ||||||||| |||||||| || || |||| || Sbjct 801 TTCAAATCTTGACTTAAATCAATTTCTTCAGCCGTCCAAAAGCTGGCTTCGGCTTGCTTG 860 Query 48678 TACATATTCCATATATCACTGTATTGG--ATTGGGAAA-ATAACAAATCTAT-TTGGATT 48733 || | ||||| || || || ||| | ||||||| | ||||| | | || | || Sbjct 861 TAAAATTTCCAAATGTC---GTGGTGGGCAATGGGAAAGAGGACAAAGCGGTCTTTGTTT 917 Query 48734 TTTTGCAAGGATAGGTTCC 48752 | |||||| || |||||| Sbjct 918 TCTTGCAA-AATCGGTTCC 935 >seq533080 Length=1015 Score = 132 bits (146), Expect = 7e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||| || ||||||||||||| |||||||| | | | || || || |||| || || Sbjct 550 ATAAAGTTGTTCAAATTCATCACCCCAAACTTTGTGAAGGCCTGGACACTCATGAGGACA 609 Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 ||||| || ||||||||||| || ||||| ||||| || | ||| || |||||||| Sbjct 610 CATCAGTGTCCAGTCACCATTGCTCTCGACTCGCTTCATGAATAAATCTGGAATCCATAG 669 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAG 78094 ||| ||||| ||||| | || || ||||| || |||||||| || | ||| || Sbjct 670 TGCATAGAATAGGTCTCGTGCTCGCTGCTCTTCCTTGCCTGTATTTTTCCGACAATCCAG 729 Query 78095 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 ||| || | || || | |||||||||||| || || || || | | | ||||||| Sbjct 730 AAAGTCAAAGATGTCGGCATGCCATGGTTCCAGGTAAATGGCAAAAGCACCAGGTC 785 >seq82254 Length=5337 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78752 tttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATC 78811 ||| ||||| | |||||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 2361 TTTCTTTGTCTGCTTGTGAAGATTAGACACTGCAATTCTTGCAGCCAGGATAGCATAATC 2302 Query 78812 AGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGT 78871 |||||||| || || || || ||| || || || | | |||||||||| || || Sbjct 2301 AGGATGTTTGGTTGTCATTGTAGCACATATCTCAGCTGCCAGATTATCTAACTCAATCGT 2242 Query 78872 TGTGACCCCATTATATAGTCC 78892 ||| |||||| ||| || || Sbjct 2241 TGTCACCCCAGGATACAGGCC 2221 >seq418291 Length=2843 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| | ||||||||||||||| ||||||||| ||| | || || || || ||||| | Sbjct 1704 TCCAACAGTAGAAATGCATGCTGCTCAGTTTGGCATAGTTTGGTTCTGCAATGTGAATGT 1763 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | |||||||| || || ||||| | || | |||||| ||||| || ||||| |||| Sbjct 1764 TGAGGGACTGACTCTGGTCAATGAACGGACCACGATCAGCAGCCATCTTGATAATAGTCT 1823 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTG 76994 | || | || ||||| | |||||| Sbjct 1824 TCTGGGAGATCTCCCAGACGGTTTTG 1849 >seq360635 Length=7270 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 77131 ATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCAT 77190 ||||||| ||||| || | | ||| || || |||||||| || || || | | |||| Sbjct 612 ATTCTCCTGACAACACCCGTCTAGTATAGATGTTACTGGTGTAAGGCTCAAAACTTTCAC 553 Query 77191 TGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATT 77248 |||||||||||| |||||||| || ||||||||||| || | ||||| | |||||| Sbjct 552 AGTTTCCCAAAATCTGAGCAGTTGATGCAGTTGGCATCGGAGACACCAGCAGACTATT 495 >seq1045372 Length=114 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 77170 TATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAG 77229 |||||||||| | || |||||||||||| ||||| |||| ||||||||| |||||||| | Sbjct 114 TATATGGTTCAAAAGCTTCATTGTTTCCTAAAATCTGAGAAGTAGAAGCTGTTGGCATTG 55 Query 77230 GTGCCACCAATAA 77242 | || |||||||| Sbjct 54 GAGCTACCAATAA 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 680258529629280