Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq500837 351 6e-92 seq1659233 107 1e-18 seq1471130 96.9 2e-15 seq1638491 82.4 5e-11 seq415711 82.4 5e-11 >seq500837 Length=1780 Score = 351 bits (388), Expect = 6e-92 Identities = 308/397 (78%), Gaps = 44/397 (11%) Strand=Plus/Minus Query 58669 CAACCCCTGGGTGGCGCGTTCCAGGTACACCGTGTTCCACAGCACGATAGCCGCCGTCAC 58728 || ||| || | || || ||||| || ||||||||||||| |||||| ||||||||||| Sbjct 1775 CAGCCCATGCGCTGCCCGCTCCAGATAGACCGTGTTCCACAACACGATGGCCGCCGTCAC 1716 Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 ||| |||||||||||||| |||||||||||||||||||| || || || | |||||| || Sbjct 1715 CAGATTGAGGCCGCTGGCACGGTAGCGCTGCTGCTCGAAACTGCGGTCGCGGATTTCGCC 1656 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||||||||||||||| | | |||||||| ||||||||| || || |||||||| || Sbjct 1655 CAGGCGGTTGAAGAACATGGTGCGGGCCAGCGCGTTGCGCGCTTCCCCCTTGTTCAGCCC 1596 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTC------------------ 58890 ||||||||| ||||||||| || || |||||||||||||| Sbjct 1595 GGCATGCACCTGGCGGCGCAACTCGACGCTTTGCAGCCAGTCNNNNNNNNNNNNNNNNNN 1536 Query 58891 --------------------------CAGGATGAACAGCGTGCGCTCGATCCGGCCCAGC 58924 |||||||||||||||||||||||| ||||||||| Sbjct 1535 NNNNNNNNNNNNNNNNNNNNNNNNNNCAGGATGAACAGCGTGCGCTCGATACGGCCCAGC 1476 Query 58925 TCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATC 58984 |||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||| Sbjct 1475 TCGCGCAGCGCCACGGCCAGGCCGTTCTGACGCGGATAGCTGCCGAGCTTGCGCAGCATC 1416 Query 58985 AGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGG 59021 |||||||| || || |||||||||||||||||| ||| Sbjct 1415 AGCGAGGCCGTCACTGTGCCCTGCTTGATCGAGGTGG 1379 >seq1659233 Length=1747 Score = 107 bits (118), Expect = 1e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 58891 CAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTT 58950 |||||||||||||||||||||||| |||||| |||| |||||||| |||||||| ||||| Sbjct 1 CAGGATGAACAGCGTGCGCTCGATACGGCCCTGCTCACGCAGGGCGACGGCCAGGCCGTT 60 Query 58951 CTGGCGCGGGTA 58962 |||||||||||| Sbjct 61 CTGGCGCGGGTA 72 >seq1471130 Length=175 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 58566 GGCTCTGC--CGCCAGACGTAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGA 58623 ||| |||| ||||||| |||||||||||| |||||||||||||||||||||| |||||| Sbjct 99 GGCGCTGCTGCGCCAGAGGTAATCGCCGGTCAGGTTGATGTGCTCCCAGCCCAACGGCGA 40 Query 58624 CAGGAATTGCAGCAGCTCGCCGTCCAC 58650 |||| | |||| |||| | | ||||| Sbjct 39 CAGGTACTGCAACAGCGCATCATCCAC 13 >seq1638491 Length=449 Score = 82.4 bits (90), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 99543 CTGGTGCCGATTAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTA-C 99601 |||||| || ||||||| |||||||| |||| |||||| | |||||||||||||||| | Sbjct 185 CTGGTGGAGAATAACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGC 244 Query 99602 CAACTGAGCTAAACC 99616 || ||||||||| || Sbjct 245 CAGCTGAGCTAATCC 259 >seq415711 Length=2026 Score = 82.4 bits (90), Expect = 5e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 99559 GACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTAA 99613 ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1113 GACTCGAACTCCTGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTAA 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324206603090482