Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eisenia_20fetida_20[genbank_20GCA_5F900000155.1_202017-02-13] 1,659,527 sequences; 1,052,631,503 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq658387 104 5e-17 seq649786 100 6e-16 seq688975 84.2 4e-11 >seq658387 Length=5339 Score = 104 bits (114), Expect = 5e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 |||||||| ||||| ||||||||||| || ||| ||| ||| ||||| || |||||| Sbjct 1350 GACCCCTACATCAATGTCGATCCGGGCACCATGTCGCCGTTTCAGCATGGCGAGGTGTTC 1409 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCA 301546 || || || || || || ||||||||||| || ||||| |||||||| || |||| Sbjct 1410 GTCACCGACGACGGCGCAGAAACCGATCTCGACCTGGGCCACTACGAGCGCTTCA 1464 >seq649786 Length=1608 Score = 100 bits (110), Expect = 6e-16 Identities = 186/267 (70%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 230153 GGTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTAT 230212 ||||| |||| ||| ||| | || | || |||||||||| |||| ||| | || Sbjct 289 GGTGATTGAAATTATCAAAGACGCCGTAGTAATTGAAAAGGAG----TTTGTGAC-CGAT 235 Query 230213 TC-CTTGCC----GTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTC 230267 || ||| || || | ||||| |||||||| | | ||| | |||||||| || || Sbjct 234 TCGCTTCCCGTGAGTTTAATCGGGATGAATGCCGCTTCGATGTGTCAATATATAGAGTTT 175 Query 230268 GTAGCTGATCGTATTTTCGTGGCGCT-AGGGTACGAGAAAGTGTATAACTCCAAGAACCC 230326 || || || ||| | | |||| | | | | || | ||||| ||||| || || || Sbjct 174 GTGGCAGACCGTTTGCTGGTGGAGTTAACCGGAC-AAAAAGTTTATAATGCCGTCAATCC 116 Query 230327 CTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 |||| |||||||| | ||||| | ||||| |||||||| ||||| || ||||| || Sbjct 115 TTTCGACTTTATGGACATGATTTCCTTGCAGGGAAAAACTAATTTCTTTGAGAAGCGGGT 56 Query 230387 CAGCGATTATCAAAGGCCCGGTGTATT 230413 |||| ||||||| | | || ||||| Sbjct 55 GGGCGAATATCAAAAGGCAGGCGTATT 29 >seq688975 Length=100 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||| Sbjct 6 TTAGTATAGTGGTGAGTATCCCCCCCTGTCACGCGGTAGACCGGGGTTCAATTCCCCGA 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1024482709206658