Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enteromyxum_20leei_20[genbank_20GCA_5F001455295.1_202015-12-02] 69,045 sequences; 67,975,573 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq22640 188 6e-43 seq59245 145 7e-30 seq25167 89.7 5e-13 >seq22640 Length=3951 Score = 188 bits (208), Expect = 6e-43 Identities = 362/531 (68%), Gaps = 2/531 (0%) Strand=Plus/Minus Query 23024 ATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTA 23083 || || || || ||||| || || || ||||| | |||||| |||||||| ||| Sbjct 1371 ATAGAAGCTAGGTTGCACACAGCGGTTTCATCTTTATCAGAGTACTCAACAATTTCAGTA 1312 Query 23084 CATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 || | |||||| |||| ||| || | ||| | || || ||| |||||||| | | Sbjct 1311 CACAAATTGCTTGACTTGATCACTCCAACATTTTTTTGATTAGATTTGCGATTGCATGCA 1252 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 || ||||| | |||||| ||| | || || || | || | || | || | |||| Sbjct 1251 TCTTTGTAAACCATGTATGGCATACCAGTTTCTATTTGAGCTTCCAAAATAGAAAACCAC 1192 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | || |||||||| || | | || | ||| || |||||| ||| | | Sbjct 1191 AAAGCCTGAGCGTTAATTTGCTTCTTATAACGTTTTTCAGATTCATACTTTGTGTAAAGC 1132 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAG 23322 | |||||| ||||||| || || | | || || |||| ||| |||||||| | Sbjct 1131 TTATTAAATTCTTCACCGTAGCAATCAGATAATCCTGGTGATT-CATGTGGACACATCAA 1073 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 | |||| || | ||||| || || |||||| | |||||||||||||| || || Sbjct 1072 AGACCACTTTTCATTATTTTTTACACGCTCCATAAATAAATCCGGTATCCATAATGCATA 1013 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||| || | ||||| || || || |||| ||||| ||| |||| || ||||| || Sbjct 1012 AAACAAGTCTCTAGCGCGTACTTCTTCGCTGCCAGTGTTTTTTCTCAATTCTAAAAATTC 953 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 | || | |||||||| ||||||||||| ||||| | || || | |||||| || Sbjct 952 TTTTATATCTGAGTGCCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTATTTCC 893 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 || ||||| ||||| | || |||||||||||||||||| | || ||| || Sbjct 892 ACCTTGATCTACGTATCTGGACGTGTTGTTGTACACTCTCAACAACGGAAC 842 Score = 145 bits (160), Expect = 7e-30 Identities = 234/334 (70%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 23605 AACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTT 23664 || |||||| | ||| | || || || ||| | ||||||| || | | ||||| || Sbjct 571 AATGTTGTGCATGTGTATGCCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTT 512 Query 23665 CAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA-CACGAAG 23723 ||| || || | ||||| || ||||| || ||||| | ||||| |||||| || | Sbjct 511 CAGGGTATCAAAAATGCCTTCAATGCTATCGTCTTTCATAGCGAC-AAGAAAGCAACTGG 453 Query 23724 ACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATC 23783 ||||||| | | |||| ||| ||| ||||| || || ||||||| ||||| ||| Sbjct 452 ACATTTGTGGTCTGGGAGTACCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATC 393 Query 23784 CATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGA 23843 ||| ||||||| |||||| || || || ||||||||||| || | |||||| || | Sbjct 392 CATCAGACATTAAATTGTAAGTTTCAATAGCGGCATCAATATCATTCATGTGTATTCCAA 333 Query 23844 TGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACA 23903 || || | ||||| ||||| ||| ||||| || || | |||| ||| | | || Sbjct 332 CAGCCACTCTCATCAGCATGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCA 273 Query 23904 GATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 ||| || | || | ||||| || |||||||| Sbjct 272 AATACGACCTTTCAAGTGTTTTGAAGCCAAAATA 239 >seq59245 Length=1049 Score = 145 bits (160), Expect = 7e-30 Identities = 234/334 (70%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 23605 AACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTT 23664 || |||||| | ||| | || || || ||| | ||||||| || | | ||||| || Sbjct 479 AATGTTGTGCATGTGTATGCCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTT 538 Query 23665 CAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA-CACGAAG 23723 ||| || || | ||||| || ||||| || ||||| | ||||| |||||| || | Sbjct 539 CAGGGTATCAAAAATGCCTTCAATGCTATCGTCTTTCATAGCGAC-AAGAAAGCAACTGG 597 Query 23724 ACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATC 23783 ||||||| | | |||| ||| ||| ||||| || || ||||||| ||||| ||| Sbjct 598 ACATTTGTGGTCTGGGAGTACCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATC 657 Query 23784 CATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGA 23843 ||| ||||||| |||||| || || || ||||||||||| || | |||||| || | Sbjct 658 CATCAGACATTAAATTGTAAGTTTCAATAGCGGCATCAATATCATTCATGTGTATTCCAA 717 Query 23844 TGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACA 23903 || || | ||||| ||||| ||| ||||| || || | |||| ||| | | || Sbjct 718 CAGCCACTCTCATCAGCATGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCA 777 Query 23904 GATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 ||| || | || | ||||| || |||||||| Sbjct 778 AATACGACCTTTCAAGTGTTTTGAAGCCAAAATA 811 Score = 132 bits (146), Expect = 4e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| | || |||||||||| || || |||| || | ||||| || || || | Sbjct 8 CATAAATAAGTCAGGTATCCATAATGCATAAAACAAGTCTCTAGCGCGTACTTCTTCGCT 67 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||||||||| ||| |||| || ||||| || | || | |||||||| |||||||| Sbjct 68 GCCGGTGTTTTTTCTCAATTCTAAAAATTCTTTTATATCTGAGTGCCACGGTTCGAGGTA 127 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 ||| ||||| | || || | |||||| || || ||||| ||||| | || ||||||||| Sbjct 128 AACAGCAAATGAACCAGGGCGCTTATTTCCACCTTGATCTACGTATCTGGACGTGTTGTT 187 Query 23533 GTACACTCTTAGCATCGGCAC 23553 ||||||||| | || ||| || Sbjct 188 GTACACTCTCAACAACGGAAC 208 >seq25167 Length=1585 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| || |||||||| || || || ||||||||||| || || || ||||| ||| | Sbjct 1078 ACATGTATTGGCGTTCTTTGCTGCCAGTGATGGTATTGTAAATGAAAACTTGGTTGAATG 1137 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| || ||||| ||| | | || | ||||||||||| ||| | ||| | || || Sbjct 1138 TTTTGCAAGTGAAGTACAATGGCCTGAAGTCAGATGCTTTTATGGACTGCAAATTGCAAT 1197 Query 57806 TGAAAACGTGCATTCAGAAATGTA 57829 |||||| | || ||||||||||| Sbjct 1198 TGAAAATATTCACTCAGAAATGTA 1221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445381675736400