Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enteromyxum_20leei_20[genbank_20GCA_5F001455295.1_202015-12-02] 69,045 sequences; 67,975,573 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq22640 165 1e-35 seq25167 152 6e-32 seq59245 141 1e-28 seq68710 102 1e-16 seq67756 102 1e-16 >seq22640 Length=3951 Score = 165 bits (182), Expect = 1e-35 Identities = 734/1144 (64%), Gaps = 49/1144 (4%) Strand=Plus/Minus Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 || ||||| ||||| || || | ||| | |||||||| | ||||| ||||| | || Sbjct 1947 TGAAATTCCCCAGATAAAACACGTCGATTATAAATATTTGTTGTATAAGGTTCAATAGAT 1888 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || || ||||||| ||||||| ||||| || || ||||| ||||| | || | |||| Sbjct 1887 TCGTTGTTTCCCATTATTTGAGACGTTGACGCCGTAGGCATTGGTGCAATTAAAAGACTA 1828 Query 62511 TTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGATG-TTCCCAATTCCAAAGATCC 62567 ||||||| ||| |||||| |||||||| |||| | ||| || ||||| ||| | ||| Sbjct 1827 TTTCTAACACC--ATGTTCCTTGATTTTAGCTTTCA-ATGATTTCCAATCCCATAAATCA 1771 Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTAC---TGGCGTACGATCCT 62624 | || || | |||||||| ||||| | | ||| || || || Sbjct 1770 GTAGGAGTAATATTCCACATGTCATATTGTAAGATACCTTGAGATATGG-GT--GAATCT 1714 Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684 || || ||| || | | | ||| || ||| | ||| | ||| | Sbjct 1713 TTGTAAGTGGAGTATACGCCATGTTCTTTTGCTTCTTCACATGAAGACTCAAGTGCGGCA 1654 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGG 62743 | ||| || |||||||| || | |||| | | | || ||||| | |||||| ||||| Sbjct 1653 TGATATATTGTTTCAAATATTTCAATATTCAACTTCCTG-GCTTCTGCGCTATCGAATGG 1595 Query 62744 ATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | | |||| || || || || || | ||||| || ||||| || | |||||||| Sbjct 1594 C-ATTCTAAGTTTGATGAATGCATCAGCAAGACCTTGTACGCCAATTCCTACAGGTCTAT 1536 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 | | | |||| || ||| |||||| || ||||| |||| | ||| || || |||| Sbjct 1535 GACGCATATTTGAATTTTTTGCTTCTATAACGGGATAGAAATTCAAATCAATTATCTTAT 1476 Query 62863 TGAGATTTCTGACAATTACTTT---GACCACATCCTTCAGTTTGAGA--AAATCAAATCG 62917 | | || | || |||||||| |||| ||| | ||||| | |||| | | Sbjct 1475 TCAAGTTCTTAACTATTACTTTTGTGACCTCATGAAGCTTTTTGAAATGAAATGTTTTAG 1416 Query 62918 CCC-ATCTATTACAAACATGTTCAAT------------GCA-----ACAGATGCCAGATT 62959 |||| || || | | || ||| ||| | ||| || || || Sbjct 1415 TATTATCTTTTTCAGA--TTTTGAATAAACAAACTTCGGCAGACATATAGAAGCTAGGTT 1358 Query 62960 ACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 63019 ||||| || |||| ||| | || | | || ||||| || | ||| || | Sbjct 1357 GCACACAGCGGTTTCATCTTTATCAGAGTACTCAACAATTTCAGTACACAAATTGCTTGA 1298 Query 63020 CTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 63079 |||||| ||| | ||||| ||||||| || || || ||||| || |||| || Sbjct 1297 CTTGATCACTCCAACATTTTTTTGATTAGATTTGCGATTGCATGCATCTTTGTAAACCAT 1238 Query 63080 GAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 63139 | |||| |||||||||| || |||| ||| | ||| | ||| | | |||| || Sbjct 1237 GTATGGCATACCAGTTTCTATTTGAGCTTCCAAAATAGAAAACCACAAAGCCTGAGCGTT 1178 Query 63140 TATTATAGATTTGTATCTCCTTTCTCT--TTCGTATAGAGTATACAATCGT-TCGAACTC 63196 ||| | || ||| | ||| || ||| || || || || | | | || || Sbjct 1177 AATTT--GCTTCTTATAACGTTTTTCAGATTCATACTTTGTGTA-AAGCTTATTAAATTC 1121 Query 63197 GTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCC 63256 || || | || |||| || |||||| ||||||||||| ||||||| | | Sbjct 1120 TTCACCGTAGCAATCAGATAATCCTGGTGATTCATGTGGACACATCAAAGACCACTTTTC 1061 Query 63257 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63316 | || || || || | |||||| | ||| || ||||| | || ||| | ||||| Sbjct 1060 ATTATTTTTTACACGCTCCATAAATAAATCCGGTATCCATAATGCATAAAACAAGTCTCT 1001 Query 63317 TGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63376 | | ||| ||| | || || || ||| | | || | || | | ||||| || Sbjct 1000 AGCGCGTACTTCTTCGCTGCCAGTGTTTTTTCTCAATTCTAAAAATTCTTTTATATCTGA 941 Query 63377 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63436 ||||||||||| | ||| | || | ||||| || || ||||| || ||||||| Sbjct 940 GTGCCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTATTTCCACCTTGATCTAC 881 Query 63437 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCGTTTGATATACCAT 63495 |||||| | ||||| || || |||||||||| |||| |||| || |||||||| |||| Sbjct 880 GTATCTGGACGTGTTGTTGTACACTCTCAACAACGGAACTAAT-CCATTTGATATTCCAT 822 Query 63496 TGGT 63499 | || Sbjct 821 TAGT 818 Score = 141 bits (156), Expect = 1e-28 Identities = 222/316 (70%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || ||||| || || ||| || || | || |||| || | || ||| | |||||| Sbjct 552 CCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTTCAGGGTATCAAAAATGCCT 493 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 || |||||||| || |||| | ||||| || || |||||||| | | | ||| Sbjct 492 TCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGGGAGTA 433 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || | || || || ||||| | ||||| ||||||||| ||||| | || |||||| Sbjct 432 CCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAATTGTAA 373 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGA--ATTCCTACTGCGACACGCATTAACA 63783 || |||||||| | || ||||| ||| ||| ||||| || || || | ||| | || Sbjct 372 GTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCATCAGCA 315 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 |||| || ||||||||||||| | | ||| ||| ||| ||| || || |||| | | Sbjct 314 TGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTCAAGTG 255 Query 63844 TTTTAAAACCAAAATA 63859 |||| || |||||||| Sbjct 254 TTTTGAAGCCAAAATA 239 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 62024 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62083 ||| |||||||| | || | || |||||||| ||| | ||||| | | | || Sbjct 2349 TTTAATTTTATCGGTATCAACAGTAAATTGAATAGGATTTGCACCGGGTCTTGATCTAAG 2290 Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 |||||||||||| ||||| || || | ||||||||||||||||||| || || ||||| Sbjct 2289 ATAGTACATTCCAGTTTTGAGGCCCTTATTCCATCCGTAAAAATGCATGCTAGTAAGTTT 2230 Query 62144 --GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCT 62201 || | | || || || ||| | || | ||||||||||||||| || || | Sbjct 2229 TCCGACTGA--AGGTTCAGCCATAAAAACGTTGAAAGATTGACTTTGATCAATAAAAGGA 2172 Query 62202 CCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAA 62261 || | || |||||||| | || | || || || || |||||| ||||||||| Sbjct 2171 CCACGATCAGCAGCCATATCAATAAGTGTTTTCATTGAAAGTTCCCATGAGGTTTTATAA 2112 Query 62262 A 62262 | Sbjct 2111 A 2111 >seq25167 Length=1585 Score = 152 bits (168), Expect = 6e-32 Identities = 208/286 (73%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 || |||||| || ||||||| || || |||||| | |||| | || ||| || || Sbjct 1339 ATTTATCCAGTTGAGAGCCCACTCAGCTTTCTTTCTGACACTACTTATATGTTCAATTGC 1280 Query 33815 ATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTA 33872 ||| ||| | | |||| || | |||||| | |||||| |||||||| || || Sbjct 1279 GCCAAAAAGACGTTCTCTTTC--TAATGGATCTTTGATATAAGTGTCGATCAACAGGCTG 1222 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC- 33931 |||||||| || ||||| |||||||| || || || | ||| || || ||||| | || Sbjct 1221 TACATTTCTGAGTGAATATTTTCAATTGCAATTTGCAGTCCATAAAAGCATCTGACTTCA 1162 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || || || ||||| | ||| | ||| | || |||||||| || || |||||||| Sbjct 1161 GGCCAT-TGTACTTCACTTGCAAAACATTCAACCAAGTTTTCATTTACAATACCATCACT 1103 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 34037 ||| ||||| ||||||||||||||| || ||||| |||||| ||| Sbjct 1102 GGCAGCAAAGAACGCCAATACATGTGATACAAAATGTTTTTCTTCT 1057 >seq59245 Length=1049 Score = 141 bits (156), Expect = 1e-28 Identities = 222/316 (70%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || ||||| || || ||| || || | || |||| || | || ||| | |||||| Sbjct 498 CCAATTCCACCGGCATATTTCGAAATGAGTGAGCATTCCTTCAGGGTATCAAAAATGCCT 557 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 || |||||||| || |||| | ||||| || || |||||||| | | | ||| Sbjct 558 TCAATGCTATCGTCTTTCATAGCGACAAGAAAGCAACTGGACATTTGTGGTCTGGGAGTA 617 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || | || || || ||||| | ||||| ||||||||| ||||| | || |||||| Sbjct 618 CCGGAGTTGAACAAAGTAGGTGTGGCGTGAGTAAACCATCCATCAGACATTAAATTGTAA 677 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGA--ATTCCTACTGCGACACGCATTAACA 63783 || |||||||| | || ||||| ||| ||| ||||| || || || | ||| | || Sbjct 678 GTTTCAATAGCGGCATCAATATC--ATTCATGTGTATTCCAACAGCCACTCTCATCAGCA 735 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 |||| || ||||||||||||| | | ||| ||| ||| ||| || || |||| | | Sbjct 736 TGTGTTGTGGTCTTTCAACAACAATATCGTTGATTCTCATCAAATACGACCTTTCAAGTG 795 Query 63844 TTTTAAAACCAAAATA 63859 |||| || |||||||| Sbjct 796 TTTTGAAGCCAAAATA 811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 ||||| || ||||||||||| | ||| | || | ||||| || || ||||| || Sbjct 102 ATATCTGAGTGCCACGGTTCGAGGTAAACAGCAAATGAACCAGGGCGCTTATTTCCACCT 161 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCGTTTGA 63487 ||||||| |||||| | ||||| || || |||||||||| |||| |||| || ||||| Sbjct 162 TGATCTACGTATCTGGACGTGTTGTTGTACACTCTCAACAACGGAACTAAT-CCATTTGA 220 Query 63488 TATACCATTGGT 63499 ||| ||||| || Sbjct 221 TATTCCATTAGT 232 >seq68710 Length=718 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 326 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 385 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || ||||| |||| Sbjct 386 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 445 Query 33724 C 33724 | Sbjct 446 C 446 >seq67756 Length=723 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 393 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 334 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || ||||| |||| Sbjct 333 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 274 Query 33724 C 33724 | Sbjct 273 C 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629274028047600